Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_B12
         (345 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    27   0.62 
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    27   0.82 
SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase Trp4|S...    27   1.1  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   3.3  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    25   4.4  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    25   4.4  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    25   4.4  

>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1183

 Score = 27.5 bits (58), Expect = 0.62
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 174  EAPWLRCLSSLCKLNQLASKRSFC*CSYL 260
            +AP L  LS++C  +  + KR FC  +YL
Sbjct: 967  DAPALSLLSAVCAYDYASDKRKFCKENYL 995


>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 27.1 bits (57), Expect = 0.82
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 342 MN*VYGYFTLLSGCGIQENFNLFL-RIKVNKNINKMSAWRQAGLT 211
           +N    +  LL+G   Q+  N +  +I + K I+ +  WRQ GLT
Sbjct: 252 LNKTKAFARLLTGPDYQKFVNSYHEQITLKKQISDLQEWRQMGLT 296


>SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase
           Trp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 354

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 115 QSHTLGQRTTCTPPESCSKVKKEXLTNM-HENHQLLIYV 2
           QSH L    + TP  +   ++ E L+NM H NH +L YV
Sbjct: 270 QSHPLSSVASGTPSANAILLE-ELLSNMLHANHPILDYV 307


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 127 RISRQSHTLGQRTTCTPPESCSKVKK 50
           ++ ++S     +T  TPP+ CS +KK
Sbjct: 36  QMKKESLAASVKTPSTPPKECSHLKK 61


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 134 NVTNLTSESHLGPTDDLHTSRKLFQS 57
           +V+ L+S SHL PT    +S +L+ S
Sbjct: 229 SVSALSSSSHLQPTSATSSSSRLYPS 254


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -1

Query: 183 KVLRRSLKQEFRAEALKRDESHVRVTPWANGRPAHL 76
           K  + S  + FR     RD+   +  P +N  P HL
Sbjct: 224 KEKQTSFLRRFRVPGFSRDKDKTKDCPSSNSNPFHL 259


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = -3

Query: 184 QGASQVTKARISSRGVET*RISRQSHTLGQRTTCTPPESCSKVKKEXLTNMHENHQL 14
           Q    + K  I SR  +  R+ + S     RTT TPP S S   K+ L  + +  +L
Sbjct: 322 QELPSLNKLSIQSRAFKKMRLPKIS-----RTTDTPPASTSNSNKKNLDKLKKMRKL 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,355,144
Number of Sequences: 5004
Number of extensions: 23427
Number of successful extensions: 81
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)