Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_B05
         (324 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   2.8  
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    25   3.7  
SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    24   4.9  
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb...    24   6.5  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    23   8.6  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    23   8.6  
SPAC1F8.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   8.6  
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb...    23   8.6  

>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 75  N*IWKCFISMSNMKKKFF 128
           N  WKC++ + ++KK +F
Sbjct: 160 NETWKCYLHIQDVKKSYF 177


>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 222 YFILRTK*L-LSHCYKIG*NVLLVPMSIIGR 311
           + +LR K L   HCY  G   +LV   I+GR
Sbjct: 133 FLVLRKKPLQFLHCYHHGATAVLVYTQIVGR 163


>SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 195 FSHLIFTILYFILRTK*LLSHCYKI 269
           F   +FTIL+  +RT  LLSH   I
Sbjct: 70  FYKKLFTILWLTVRTVALLSHARNI 94


>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +3

Query: 192 QFSHLIFTILYFILRTK*LLSHCYKIG*NVLLVPMSIIGR 311
           ++  L+ T+  F+ +      HCY  G   LL    ++GR
Sbjct: 144 KYLELMDTVFLFLKKKPLAFLHCYHHGITALLCFTQLLGR 183


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 194 IFTFNFHYTIFYSKDKVIIKSLLQNRLKCTFSTYEY 301
           +F   F +  FY  D ++   LLQ  L+  F+  E+
Sbjct: 557 LFYVLFLFACFYGLDYILCAELLQAFLRVVFTFCEH 592


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +2

Query: 212  HYTIFYSKDKVIIKSLLQNRLKCTFS 289
            ++T+ Y++ K +IK LL + L C ++
Sbjct: 1250 NFTVQYAEAKDVIKGLLFSILTCIYN 1275


>SPAC1F8.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -2

Query: 173 KKI*SLKYSHETNKLKKFFFHV*HANKTLPNLITSLLY 60
           K I S   S+E  +   F F   +AN T PN I+ L Y
Sbjct: 16  KGINSAYVSNEEGETVDFTFSGFYANLTYPNEISELNY 53


>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 230 SKDKVIIKSLLQNRLKCTF 286
           SKD+ I+  LL  R KCT+
Sbjct: 136 SKDEAILDFLLVQRGKCTY 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,169,595
Number of Sequences: 5004
Number of extensions: 19778
Number of successful extensions: 31
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)