Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_B04
         (744 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q225K5 Cluster: Putative uncharacterized protein; n=1; ...    33   7.4  
UniRef50_Q981F3 Cluster: TRANSPOSASE FOR INSERTION SEQUENCE ELEM...    33   9.8  

>UniRef50_Q225K5 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 226

 Score = 33.1 bits (72), Expect = 7.4
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +1

Query: 229 KVRINHKCNIFKHYYSTKHWCSLSIKNMYSFSFPIKILVN 348
           +V +N  CNI+   YST+  C+  I+ +  F  P+++ +N
Sbjct: 62  QVELNVSCNIYPPNYSTEEQCA-DIQKIVDFQSPVEVYIN 100


>UniRef50_Q981F3 Cluster: TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT
           IS1138; n=1; Mycoplasma pulmonis|Rep: TRANSPOSASE FOR
           INSERTION SEQUENCE ELEMENT IS1138 - Mycoplasma pulmonis
          Length = 186

 Score = 32.7 bits (71), Expect = 9.8
 Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
 Frame = +1

Query: 79  AQTIPCSAXXKNSGLHHSTQLPIXRSCVVNKNLKMIWMKIVLQFSNSSKLKVRINHKCNI 258
           AQ        KN G+HHST   + R    N N+  I+ ++  QF    K K RI    ++
Sbjct: 27  AQNYSSRQIAKNIGVHHST---VSRELKRNTNIYGIYERVTAQF----KYKKRIKFHKSL 79

Query: 259 FKHYYSTK-HWCSLSIKNMYSFSF 327
           FK   + K    S+  K +Y   F
Sbjct: 80  FKFQVNFKFEKYSILFKKIYEKDF 103


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 548,063,039
Number of Sequences: 1657284
Number of extensions: 8740822
Number of successful extensions: 18307
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18307
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60911752460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)