Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_B04
         (744 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AF016681-5|AAK68345.1|  144|Caenorhabditis elegans Hypothetical ...    29   3.5  
AF038612-2|AAB92044.1|  507|Caenorhabditis elegans Hypothetical ...    29   4.6  
U41541-2|ABA54426.1|  526|Caenorhabditis elegans Hypothetical pr...    28   6.1  
U41541-1|ABA54425.1|  795|Caenorhabditis elegans Hypothetical pr...    28   6.1  

>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical protein
            F25C8.3b protein.
          Length = 3175

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 6/117 (5%)
 Frame = +1

Query: 91   PCSAXXKNSGLHHSTQLPIXRSCVVNKNLKMI----WMKIVLQFSNSSKLKVRINHKCN- 255
            P      N G  HS Q  + +S + ++   M+    W+K++++FSNS  L+      C+ 
Sbjct: 1488 PVIIPHSNHGSAHSQQPVVLKSSMDDEEQHMLSNLPWIKVLIKFSNSFDLECNHVGVCSA 1547

Query: 256  -IFKHYYSTKHWCSLSIKNMYSFSFPIKILVNYKNLIIPN*QNTI*GILN*IHSYNS 423
              F+  +        S+  +Y     +    + +NL+  N Q     +   IH+  S
Sbjct: 1548 KCFQRVHRQCFRMIESLSTLYGMERNVSTRADKRNLLADNWQAKQQALRKSIHARQS 1604


>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical protein
            F25C8.3a protein.
          Length = 3184

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 6/102 (5%)
 Frame = +1

Query: 91   PCSAXXKNSGLHHSTQLPIXRSCVVNKNLKMI----WMKIVLQFSNSSKLKVRINHKCN- 255
            P      N G  HS Q  + +S + ++   M+    W+K++++FSNS  L+      C+ 
Sbjct: 1488 PVIIPHSNHGSAHSQQPVVLKSSMDDEEQHMLSNLPWIKVLIKFSNSFDLECNHVGVCSA 1547

Query: 256  -IFKHYYSTKHWCSLSIKNMYSFSFPIKILVNYKNLIIPN*Q 378
              F+  +        S+  +Y     +    + +NL+  N Q
Sbjct: 1548 KCFQRVHRQCFRMIESLSTLYGMERNVSTRADKRNLLADNWQ 1589


>AF016681-5|AAK68345.1|  144|Caenorhabditis elegans Hypothetical
           protein F22E5.7 protein.
          Length = 144

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 154 SCVVNKNLKMIWMKIVLQFSNSSKLKVRINHKCNIFKHYYS 276
           S + +K L ++ +  +L FSNS+K    +N +C     +YS
Sbjct: 3   SSISSKLLLLLLLTFLLTFSNSTKFTALVNLRCRSHAVWYS 43


>AF038612-2|AAB92044.1|  507|Caenorhabditis elegans Hypothetical
           protein F13B6.2 protein.
          Length = 507

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 246 QMQYL*TLLFYKTLVFTFN*KHVFIFISNKNTSK 347
           QM Y    L    L+FT    H+FI  +NKN +K
Sbjct: 464 QMNYSAPFLLVLFLMFTIKKSHIFINYNNKNRTK 497


>U41541-2|ABA54426.1|  526|Caenorhabditis elegans Hypothetical
           protein C41A3.2b protein.
          Length = 526

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +1

Query: 193 KIVLQFSNSSKLKVRINHKCNIFKHY---YSTKHWCSLSIKNMYSFSFPIKILVNYKNLI 363
           KIV    ++S +  ++NH CNI   Y    +T H C+++ KN+   +   K L    N  
Sbjct: 201 KIVASEKSASVINEKVNHNCNICVVYAPVAATTHVCTMT-KNVLPTTSSQKSLELRNNST 259

Query: 364 IPN 372
           + N
Sbjct: 260 VQN 262


>U41541-1|ABA54425.1|  795|Caenorhabditis elegans Hypothetical
           protein C41A3.2a protein.
          Length = 795

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +1

Query: 193 KIVLQFSNSSKLKVRINHKCNIFKHY---YSTKHWCSLSIKNMYSFSFPIKILVNYKNLI 363
           KIV    ++S +  ++NH CNI   Y    +T H C+++ KN+   +   K L    N  
Sbjct: 201 KIVASEKSASVINEKVNHNCNICVVYAPVAATTHVCTMT-KNVLPTTSSQKSLELRNNST 259

Query: 364 IPN 372
           + N
Sbjct: 260 VQN 262


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,505,124
Number of Sequences: 27780
Number of extensions: 235417
Number of successful extensions: 502
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)