Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_A21
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    48   1e-06
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    42   8e-05
SPBC36.08c |cog2||Golgi transport complex subunit Cog2 |Schizosa...    27   1.8  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   3.2  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    27   3.2  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    26   5.6  
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    25   7.4  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    25   7.4  

>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1004

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 24/42 (57%), Positives = 27/42 (64%)
 Frame = -1

Query: 663  VPGACPKSYGFNAARLAGIPKEITRRAHEISKKLEKEAMCAR 538
            VPG   KSYG N AR+AGIP  I  RA EIS+  EK+   AR
Sbjct: 928  VPGVASKSYGLNVARMAGIPFSILSRATEISENYEKKHRNAR 969


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1254

 Score = 41.9 bits (94), Expect = 8e-05
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = -1

Query: 657  GACPKSYGFNAARLAGIPKEITRRAHEISKKLEK-EAMCARAFRDIMKMEN 508
            G CPKSYG N A +AG+P+++   A E + +LE+  A    A  DI  M +
Sbjct: 1177 GICPKSYGMNVASMAGLPEKVIDAAEEKASELEQASASFINASDDIALMSD 1227


>SPBC36.08c |cog2||Golgi transport complex subunit Cog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 191

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -1

Query: 201 STMLTM*HSSEERIHNSIYEXISKNSKKANNVLIIDNKINEQLFVKKI 58
           ST+++  H SEE++ NS    I  +++  NN+    +  NE+L    +
Sbjct: 91  STLISSIHRSEEQLKNSKQSLIGHSTEIQNNLKHKQDVENEKLIASNL 138


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 651 CPKSYGFNAARLAGIPKEITRRAHEISKKLEKEAMCAR 538
           C   Y     RLA  PK    R H ++++ E+E +C R
Sbjct: 550 CCSGYSKAQTRLARRPKGAKLRYHLLTEEFEEEHICFR 587


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 645 KSYGFNAARLAGIPKEITRRAHEI 574
           +S+G   A +AGIPK +   A E+
Sbjct: 904 QSHGLKVAEMAGIPKNVLLAAEEV 927


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 316 TAIY*VILMCYFVFKNC 266
           T IY ++L CY++F  C
Sbjct: 313 TGIYVLLLCCYYIFDTC 329


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 603 KEITRRAHEISKKLEKEAM 547
           KE+ RR H +  K EKEA+
Sbjct: 5   KELARRLHTLQSKNEKEAL 23


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 576 ISKKLEKEAMCARAFRDIM 520
           + K+L+KE  C ++F+D M
Sbjct: 71  VGKQLDKEITCLKSFKDFM 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,373,869
Number of Sequences: 5004
Number of extensions: 43703
Number of successful extensions: 106
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)