Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_A21
(666 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0072 + 14323449-14324274,14324351-14324447,14325175-143252... 50 2e-06
01_01_0571 - 4233769-4234239,4234340-4234378,4234712-4234839,423... 38 0.009
07_03_0557 + 19447367-19447517,19447630-19447730,19448359-194484... 33 0.20
05_03_0254 + 11089236-11089290,11089366-11089415,11089530-110895... 31 0.62
04_04_0447 - 25297351-25297575,25297663-25298370,25298824-252991... 29 3.3
11_04_0236 + 15215386-15216197,15216854-15218888,15219131-152200... 29 4.4
03_04_0029 - 16610182-16611753 28 7.7
>09_04_0072 + 14323449-14324274,14324351-14324447,14325175-14325277,
14325359-14325412,14325495-14325569,14325597-14325650,
14325687-14325755,14325840-14325923,14326115-14326312,
14326428-14326927,14327011-14327140,14328226-14328317,
14328776-14328954,14329114-14329316,14329398-14329499,
14330047-14330209,14330690-14330979,14331088-14331225,
14331311-14331390,14331510-14331606,14331685-14331814,
14331921-14332162
Length = 1301
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/34 (61%), Positives = 25/34 (73%)
Frame = -1
Query: 660 PGACPKSYGFNAARLAGIPKEITRRAHEISKKLE 559
PG+CPKSYG N ARLAGIP + +RA+E S E
Sbjct: 1206 PGSCPKSYGVNVARLAGIPASVLQRANEKSSDFE 1239
>01_01_0571 - 4233769-4234239,4234340-4234378,4234712-4234839,
4235329-4235470,4235519-4235905,4236045-4236230,
4236382-4236659,4236757-4236883,4237270-4237442,
4237610-4237657,4237734-4237767,4237837-4237965,
4238865-4238960,4239419-4239485,4240030-4240085,
4240522-4240617,4241127-4242222,4243221-4243402
Length = 1244
Score = 37.5 bits (83), Expect = 0.009
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = -1
Query: 657 GACPKSYGFNAARLAGIPKEITRRA 583
GACP+SYG A +AG+P+ I RA
Sbjct: 1151 GACPESYGLQVATMAGLPRSIVERA 1175
>07_03_0557 +
19447367-19447517,19447630-19447730,19448359-19448480,
19448725-19448912,19449000-19449178,19449370-19449711,
19449795-19449859,19450259-19450317,19450486-19450573,
19450653-19450722,19450759-19450992,19451072-19451411,
19451643-19451691,19452690-19452780,19453077-19453442
Length = 814
Score = 33.1 bits (72), Expect = 0.20
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +1
Query: 397 DRNQTYYYCFFTIKAHF*IQQHSNRQCRQQLSNATGIVFHFHDIPKGSCAH 549
D Q+ Y F ++ HF H QC +L ++ + H P GS H
Sbjct: 175 DETQSLMYTLFKLEEHF---PHDKSQCNSELHHSISLPKDLHGAPPGSFTH 222
>05_03_0254 +
11089236-11089290,11089366-11089415,11089530-11089562,
11090601-11091674,11092245-11092728,11092857-11092882,
11092883-11092993,11093082-11093171,11093251-11093322,
11094043-11094153,11095086-11095143,11095605-11095804,
11096666-11096818,11097134-11097334
Length = 905
Score = 31.5 bits (68), Expect = 0.62
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -1
Query: 660 PGACPKSYGFNAARLAGIPKEITRRAHEISKKLEKEAMCARAFRDIMKME 511
PGAC +S+G + A A P+ + A +++LE + A F D K E
Sbjct: 791 PGACDQSFGIHVAEFANFPEAVVALAKSKAEELE-DFSTAPNFSDDSKDE 839
>04_04_0447 - 25297351-25297575,25297663-25298370,25298824-25299123,
25299876-25299927,25300530-25300673,25301002-25301258,
25301533-25301739,25301819-25301992,25302409-25302432,
25302610-25302677,25304607-25304665,25304802-25304877,
25304965-25305070,25305268-25305377,25305831-25305995,
25306571-25306656,25306893-25306957,25307280-25307330,
25309009-25309056,25309677-25309796,25310226-25310301,
25310780-25310877,25312149-25312404,25313117-25313238
Length = 1198
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 657 GACPKSYGFNAARLAGIPKEITRRAHEI 574
G C +S F AR G+P I RRA E+
Sbjct: 981 GICRESLAFQTARKEGMPDLIIRRAEEL 1008
>11_04_0236 + 15215386-15216197,15216854-15218888,15219131-15220017,
15222420-15226194
Length = 2502
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/76 (26%), Positives = 38/76 (50%)
Frame = +2
Query: 293 QNHSINCCHYSG*KNSHITKNIK**PSLNSPKW*RTGIKLITTVSSQSKRIFKYSNTQIV 472
Q+ ++CC + H+ +N++ +L S + +K ++ VSS ++ + S T
Sbjct: 1659 QDICLSCCALP---SEHLQRNME---TLGSLLGAVSNLKTLSIVSSSNQNVDMVSGTSDA 1712
Query: 473 SVASNSLTPPALFSIF 520
+VA + LTPP F
Sbjct: 1713 TVAWDFLTPPRFLQRF 1728
>03_04_0029 - 16610182-16611753
Length = 523
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = -2
Query: 623 PASLEYPKKSPAELTRYPRNWKRKPCAHEPLGIS*KWKTMPVALESCWR 477
P E + + + L +Y W+ + ++ +WK PV+ S WR
Sbjct: 472 PFGAEAVESARSLLRKYDSGWEMSAPSPAAAAVALRWKGQPVSFCSLWR 520
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,217,970
Number of Sequences: 37544
Number of extensions: 256566
Number of successful extensions: 588
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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