Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_A21
(666 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y16676-1|CAC79990.1| 328|Homo sapiens sperm protein protein. 59 2e-08
U73737-1|AAB47425.1| 1360|Homo sapiens hMSH6 protein. 59 2e-08
U54777-1|AAB39212.2| 1360|Homo sapiens hMSH6 protein protein. 59 2e-08
U28946-1|AAC50461.1| 1360|Homo sapiens G/T mismatch binding prot... 59 2e-08
D89645-1|BAA23674.1| 1360|Homo sapiens GTBP-N protein. 59 2e-08
BC004246-1|AAH04246.1| 1360|Homo sapiens mutS homolog 6 (E. coli... 59 2e-08
AY082894-1|AAL87401.1| 1358|Homo sapiens mutS homolog 6 (E. coli... 59 2e-08
U61981-1|AAB06045.1| 1128|Homo sapiens hMSH3 protein. 36 0.098
J04810-1|AAB47281.1| 1137|Homo sapiens MSH3 protein. 36 0.098
D61419-1|BAD27111.1| 1137|Homo sapiens hMSH3 protein protein. 36 0.098
BC130436-1|AAI30437.1| 1137|Homo sapiens mutS homolog 3 (E. coli... 36 0.098
BC130434-1|AAI30435.1| 1137|Homo sapiens mutS homolog 3 (E. coli... 36 0.098
AY275681-1|AAP13535.1| 1140|Homo sapiens mutS homolog 3 (E. coli... 36 0.098
BC126987-1|AAI26988.1| 305|Homo sapiens FLJ37440 protein protein. 31 4.9
BC126986-1|AAI26987.1| 393|Homo sapiens FLJ37440 protein protein. 31 4.9
BC038242-1|AAH38242.1| 261|Homo sapiens Similar to RIKEN cDNA 1... 31 4.9
BC035784-1|AAH35784.1| 439|Homo sapiens hypothetical protein FL... 31 4.9
AK094759-1|BAC04416.1| 439|Homo sapiens protein ( Homo sapiens ... 31 4.9
AC092645-2|AAY14854.1| 439|Homo sapiens unknown protein. 31 4.9
U41221-1|AAA82080.1| 887|Homo sapiens hMSH2 protein. 30 8.5
U04045-1|AAA61870.1| 934|Homo sapiens hMSH2 protein. 30 8.5
U03911-1|AAA18643.1| 934|Homo sapiens hMSH2 protein. 30 8.5
L47583-1|AAB59564.1| 934|Homo sapiens DNA mismatch repair prote... 30 8.5
L47582-1|AAB59565.1| 934|Homo sapiens DNA mismatch repair prote... 30 8.5
L47581-1|AAA76858.1| 934|Homo sapiens DNA mismatch repair prote... 30 8.5
BC021566-1|AAH21566.1| 934|Homo sapiens mutS homolog 2, colon c... 30 8.5
AY601851-1|AAS99351.1| 934|Homo sapiens mutS homolog 2, colon c... 30 8.5
AK223284-1|BAD97004.1| 878|Homo sapiens mutS homolog 2 variant ... 30 8.5
AK222860-1|BAD96580.1| 878|Homo sapiens mutS homolog 2 variant ... 30 8.5
>Y16676-1|CAC79990.1| 328|Homo sapiens sperm protein protein.
Length = 328
Score = 58.8 bits (136), Expect = 2e-08
Identities = 23/47 (48%), Positives = 34/47 (72%)
Frame = -1
Query: 663 VPGACPKSYGFNAARLAGIPKEITRRAHEISKKLEKEAMCARAFRDI 523
+ GACPKSYGFNAARLA +P+E+ ++ H +++ EK R FR++
Sbjct: 258 IKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEKMNQSLRLFREV 304
>U73737-1|AAB47425.1| 1360|Homo sapiens hMSH6 protein.
Length = 1360
Score = 58.8 bits (136), Expect = 2e-08
Identities = 23/47 (48%), Positives = 34/47 (72%)
Frame = -1
Query: 663 VPGACPKSYGFNAARLAGIPKEITRRAHEISKKLEKEAMCARAFRDI 523
+ GACPKSYGFNAARLA +P+E+ ++ H +++ EK R FR++
Sbjct: 1290 IKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEKMNQSLRLFREV 1336
>U54777-1|AAB39212.2| 1360|Homo sapiens hMSH6 protein protein.
Length = 1360
Score = 58.8 bits (136), Expect = 2e-08
Identities = 23/47 (48%), Positives = 34/47 (72%)
Frame = -1
Query: 663 VPGACPKSYGFNAARLAGIPKEITRRAHEISKKLEKEAMCARAFRDI 523
+ GACPKSYGFNAARLA +P+E+ ++ H +++ EK R FR++
Sbjct: 1290 IKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEKMNQSLRLFREV 1336
>U28946-1|AAC50461.1| 1360|Homo sapiens G/T mismatch binding protein
protein.
Length = 1360
Score = 58.8 bits (136), Expect = 2e-08
Identities = 23/47 (48%), Positives = 34/47 (72%)
Frame = -1
Query: 663 VPGACPKSYGFNAARLAGIPKEITRRAHEISKKLEKEAMCARAFRDI 523
+ GACPKSYGFNAARLA +P+E+ ++ H +++ EK R FR++
Sbjct: 1290 IKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEKMNQSLRLFREV 1336
>D89645-1|BAA23674.1| 1360|Homo sapiens GTBP-N protein.
Length = 1360
Score = 58.8 bits (136), Expect = 2e-08
Identities = 23/47 (48%), Positives = 34/47 (72%)
Frame = -1
Query: 663 VPGACPKSYGFNAARLAGIPKEITRRAHEISKKLEKEAMCARAFRDI 523
+ GACPKSYGFNAARLA +P+E+ ++ H +++ EK R FR++
Sbjct: 1290 IKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEKMNQSLRLFREV 1336
>BC004246-1|AAH04246.1| 1360|Homo sapiens mutS homolog 6 (E. coli)
protein.
Length = 1360
Score = 58.8 bits (136), Expect = 2e-08
Identities = 23/47 (48%), Positives = 34/47 (72%)
Frame = -1
Query: 663 VPGACPKSYGFNAARLAGIPKEITRRAHEISKKLEKEAMCARAFRDI 523
+ GACPKSYGFNAARLA +P+E+ ++ H +++ EK R FR++
Sbjct: 1290 IKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEKMNQSLRLFREV 1336
>AY082894-1|AAL87401.1| 1358|Homo sapiens mutS homolog 6 (E. coli)
protein.
Length = 1358
Score = 58.8 bits (136), Expect = 2e-08
Identities = 23/47 (48%), Positives = 34/47 (72%)
Frame = -1
Query: 663 VPGACPKSYGFNAARLAGIPKEITRRAHEISKKLEKEAMCARAFRDI 523
+ GACPKSYGFNAARLA +P+E+ ++ H +++ EK R FR++
Sbjct: 1290 IKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEKMNQSLRLFREV 1336
>U61981-1|AAB06045.1| 1128|Homo sapiens hMSH3 protein.
Length = 1128
Score = 36.3 bits (80), Expect = 0.098
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = -1
Query: 657 GACPKSYGFNAARLAGIPKEITRRAHEISKKLE 559
G +SYG N A+LA +P EI ++A SK+LE
Sbjct: 1053 GIAARSYGLNVAKLADVPGEILKKAAHKSKELE 1085
>J04810-1|AAB47281.1| 1137|Homo sapiens MSH3 protein.
Length = 1137
Score = 36.3 bits (80), Expect = 0.098
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = -1
Query: 657 GACPKSYGFNAARLAGIPKEITRRAHEISKKLE 559
G +SYG N A+LA +P EI ++A SK+LE
Sbjct: 1062 GIAARSYGLNVAKLADVPGEILKKAAHKSKELE 1094
>D61419-1|BAD27111.1| 1137|Homo sapiens hMSH3 protein protein.
Length = 1137
Score = 36.3 bits (80), Expect = 0.098
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = -1
Query: 657 GACPKSYGFNAARLAGIPKEITRRAHEISKKLE 559
G +SYG N A+LA +P EI ++A SK+LE
Sbjct: 1062 GIAARSYGLNVAKLADVPGEILKKAAHKSKELE 1094
>BC130436-1|AAI30437.1| 1137|Homo sapiens mutS homolog 3 (E. coli)
protein.
Length = 1137
Score = 36.3 bits (80), Expect = 0.098
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = -1
Query: 657 GACPKSYGFNAARLAGIPKEITRRAHEISKKLE 559
G +SYG N A+LA +P EI ++A SK+LE
Sbjct: 1062 GIAARSYGLNVAKLADVPGEILKKAAHKSKELE 1094
>BC130434-1|AAI30435.1| 1137|Homo sapiens mutS homolog 3 (E. coli)
protein.
Length = 1137
Score = 36.3 bits (80), Expect = 0.098
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = -1
Query: 657 GACPKSYGFNAARLAGIPKEITRRAHEISKKLE 559
G +SYG N A+LA +P EI ++A SK+LE
Sbjct: 1062 GIAARSYGLNVAKLADVPGEILKKAAHKSKELE 1094
>AY275681-1|AAP13535.1| 1140|Homo sapiens mutS homolog 3 (E. coli)
protein.
Length = 1140
Score = 36.3 bits (80), Expect = 0.098
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = -1
Query: 657 GACPKSYGFNAARLAGIPKEITRRAHEISKKLE 559
G +SYG N A+LA +P EI ++A SK+LE
Sbjct: 1065 GIAARSYGLNVAKLADVPGEILKKAAHKSKELE 1097
>BC126987-1|AAI26988.1| 305|Homo sapiens FLJ37440 protein protein.
Length = 305
Score = 30.7 bits (66), Expect = 4.9
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -2
Query: 647 LSPTVSMRPASLEYPKKSPAELTRYPRNWKRKPCAHEPLGIS*KWKTMPVALES 486
+SP ++ Y K SP + R P +PC H P IS + ++P L++
Sbjct: 163 VSPECPEGSGNVSYVKTSPFQCERNPCPMDSRPCRHLPKTISFHYLSLPSNLKT 216
>BC126986-1|AAI26987.1| 393|Homo sapiens FLJ37440 protein protein.
Length = 393
Score = 30.7 bits (66), Expect = 4.9
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -2
Query: 647 LSPTVSMRPASLEYPKKSPAELTRYPRNWKRKPCAHEPLGIS*KWKTMPVALES 486
+SP ++ Y K SP + R P +PC H P IS + ++P L++
Sbjct: 251 VSPECPEGSGNVSYVKTSPFQCERNPCPMDSRPCRHLPKTISFHYLSLPSNLKT 304
>BC038242-1|AAH38242.1| 261|Homo sapiens Similar to RIKEN cDNA
1600015H20 gene protein.
Length = 261
Score = 30.7 bits (66), Expect = 4.9
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -2
Query: 647 LSPTVSMRPASLEYPKKSPAELTRYPRNWKRKPCAHEPLGIS*KWKTMPVALES 486
+SP ++ Y K SP + R P +PC H P IS + ++P L++
Sbjct: 119 VSPECPEGSGNVSYVKTSPFQCERNPCPMDSRPCRHLPKTISFHYLSLPSNLKT 172
>BC035784-1|AAH35784.1| 439|Homo sapiens hypothetical protein
FLJ37440 protein.
Length = 439
Score = 30.7 bits (66), Expect = 4.9
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -2
Query: 647 LSPTVSMRPASLEYPKKSPAELTRYPRNWKRKPCAHEPLGIS*KWKTMPVALES 486
+SP ++ Y K SP + R P +PC H P IS + ++P L++
Sbjct: 297 VSPECPEGSGNVSYVKTSPFQCERNPCPMDSRPCRHLPKTISFHYLSLPSNLKT 350
>AK094759-1|BAC04416.1| 439|Homo sapiens protein ( Homo sapiens
cDNA FLJ37440 fis, clone BRAWH2006405, weakly similar to
FIBULIN-1, ISOFORM C PRECURSOR. ).
Length = 439
Score = 30.7 bits (66), Expect = 4.9
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -2
Query: 647 LSPTVSMRPASLEYPKKSPAELTRYPRNWKRKPCAHEPLGIS*KWKTMPVALES 486
+SP ++ Y K SP + R P +PC H P IS + ++P L++
Sbjct: 297 VSPECPEGSGNVSYVKTSPFQCERNPCPMDSRPCRHLPKTISFHYLSLPSNLKT 350
>AC092645-2|AAY14854.1| 439|Homo sapiens unknown protein.
Length = 439
Score = 30.7 bits (66), Expect = 4.9
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -2
Query: 647 LSPTVSMRPASLEYPKKSPAELTRYPRNWKRKPCAHEPLGIS*KWKTMPVALES 486
+SP ++ Y K SP + R P +PC H P IS + ++P L++
Sbjct: 297 VSPECPEGSGNVSYVKTSPFQCERNPCPMDSRPCRHLPKTISFHYLSLPSNLKT 350
>U41221-1|AAA82080.1| 887|Homo sapiens hMSH2 protein.
Length = 887
Score = 29.9 bits (64), Expect = 8.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 657 GACPKSYGFNAARLAGIPKEITRRAHEISKKLEK 556
G C +S+G + A LA PK + A + + +LE+
Sbjct: 820 GVCDQSFGIHVAELANFPKHVIECAKQKALELEE 853
>U04045-1|AAA61870.1| 934|Homo sapiens hMSH2 protein.
Length = 934
Score = 29.9 bits (64), Expect = 8.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 657 GACPKSYGFNAARLAGIPKEITRRAHEISKKLEK 556
G C +S+G + A LA PK + A + + +LE+
Sbjct: 820 GVCDQSFGIHVAELANFPKHVIECAKQKALELEE 853
>U03911-1|AAA18643.1| 934|Homo sapiens hMSH2 protein.
Length = 934
Score = 29.9 bits (64), Expect = 8.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 657 GACPKSYGFNAARLAGIPKEITRRAHEISKKLEK 556
G C +S+G + A LA PK + A + + +LE+
Sbjct: 820 GVCDQSFGIHVAELANFPKHVIECAKQKALELEE 853
>L47583-1|AAB59564.1| 934|Homo sapiens DNA mismatch repair protein
protein.
Length = 934
Score = 29.9 bits (64), Expect = 8.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 657 GACPKSYGFNAARLAGIPKEITRRAHEISKKLEK 556
G C +S+G + A LA PK + A + + +LE+
Sbjct: 820 GVCDQSFGIHVAELANFPKHVIECAKQKALELEE 853
>L47582-1|AAB59565.1| 934|Homo sapiens DNA mismatch repair protein
protein.
Length = 934
Score = 29.9 bits (64), Expect = 8.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 657 GACPKSYGFNAARLAGIPKEITRRAHEISKKLEK 556
G C +S+G + A LA PK + A + + +LE+
Sbjct: 820 GVCDQSFGIHVAELANFPKHVIECAKQKALELEE 853
>L47581-1|AAA76858.1| 934|Homo sapiens DNA mismatch repair protein
protein.
Length = 934
Score = 29.9 bits (64), Expect = 8.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 657 GACPKSYGFNAARLAGIPKEITRRAHEISKKLEK 556
G C +S+G + A LA PK + A + + +LE+
Sbjct: 820 GVCDQSFGIHVAELANFPKHVIECAKQKALELEE 853
>BC021566-1|AAH21566.1| 934|Homo sapiens mutS homolog 2, colon
cancer, nonpolyposis type 1 (E. coli) protein.
Length = 934
Score = 29.9 bits (64), Expect = 8.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 657 GACPKSYGFNAARLAGIPKEITRRAHEISKKLEK 556
G C +S+G + A LA PK + A + + +LE+
Sbjct: 820 GVCDQSFGIHVAELANFPKHVIECAKQKALELEE 853
>AY601851-1|AAS99351.1| 934|Homo sapiens mutS homolog 2, colon
cancer, nonpolyposis type 1 (E. coli) protein.
Length = 934
Score = 29.9 bits (64), Expect = 8.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 657 GACPKSYGFNAARLAGIPKEITRRAHEISKKLEK 556
G C +S+G + A LA PK + A + + +LE+
Sbjct: 820 GVCDQSFGIHVAELANFPKHVIECAKQKALELEE 853
>AK223284-1|BAD97004.1| 878|Homo sapiens mutS homolog 2 variant
protein.
Length = 878
Score = 29.9 bits (64), Expect = 8.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 657 GACPKSYGFNAARLAGIPKEITRRAHEISKKLEK 556
G C +S+G + A LA PK + A + + +LE+
Sbjct: 820 GVCDQSFGIHVAELANFPKHVIECAKQKALELEE 853
>AK222860-1|BAD96580.1| 878|Homo sapiens mutS homolog 2 variant
protein.
Length = 878
Score = 29.9 bits (64), Expect = 8.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 657 GACPKSYGFNAARLAGIPKEITRRAHEISKKLEK 556
G C +S+G + A LA PK + A + + +LE+
Sbjct: 820 GVCDQSFGIHVAELANFPKHVIECAKQKALELEE 853
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,112,479
Number of Sequences: 237096
Number of extensions: 1521403
Number of successful extensions: 2872
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 2799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2868
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7535049140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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