Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_A19
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0499 - 19725896-19726339,19726918-19726960,19727286-197273... 30 1.4
02_05_0424 + 28841562-28841569,28841636-28841714,28841826-288418... 29 2.4
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321... 29 3.2
11_06_0766 - 27115441-27115760,27115878-27116025,27116213-271174... 28 5.6
02_01_0344 + 2467191-2468282 28 5.6
02_05_0235 - 27068516-27069032,27069697-27069788,27070056-270702... 27 9.9
01_01_0585 - 4328725-4329030,4329333-4329551,4329752-4329820,432... 27 9.9
>12_02_0499 -
19725896-19726339,19726918-19726960,19727286-19727389,
19727784-19728539
Length = 448
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 376 HRLNQLLLFWRAFPASCFQSFGY 444
HRL +LL WR P+S F GY
Sbjct: 82 HRLRRLLGLWRRLPSSSFSGSGY 104
>02_05_0424 +
28841562-28841569,28841636-28841714,28841826-28841894,
28841965-28842054,28842132-28842270,28842523-28842625,
28842708-28842760,28842849-28842915,28843087-28843195,
28843588-28843653,28843740-28843808,28843893-28843959,
28844038-28844154,28844433-28844656,28845083-28845094
Length = 423
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = -1
Query: 356 AIPKRGRSLLTNM-TRTENLDHLSINSLTKTT 264
++P+ GR+ + + T TE L H+S+ S T+TT
Sbjct: 355 SLPETGRATMHKVSTLTERLTHMSVTSRTRTT 386
>02_03_0180 - 16031366-16031445,16031950-16032022,16032148-16032186,
16032434-16032715,16032790-16032948,16033034-16033390,
16033482-16033622,16033919-16034045,16034121-16034263,
16034740-16034917,16035019-16035552,16035628-16035812,
16036551-16036637,16036710-16036850,16036896-16037175,
16037944-16038020,16038326-16039138,16039292-16039801,
16039926-16040056,16040192-16040246,16040364-16040564,
16040640-16040909,16041103-16041184,16041271-16041434,
16041532-16041690,16041762-16042083,16042158-16042544,
16042811-16042999,16043233-16043317,16043458-16043753,
16043862-16043965,16044484-16044513,16044602-16044817,
16044923-16045540,16045718-16045993,16046619-16046762,
16046854-16046962,16047291-16047475,16047557-16047670,
16048348-16048479,16048929-16049249,16049424-16049891,
16054482-16054547,16054691-16054828,16054917-16055015,
16057098-16057194,16057661-16057761,16057858-16058085,
16059175-16059381,16059451-16059571,16059921-16059988,
16060148-16060213,16060396-16060509,16060949-16061300,
16063571-16063663,16063764-16063922,16064224-16064287,
16064385-16064577,16064673-16064710,16065510-16065645,
16065726-16065914,16065994-16066095,16067660-16067777,
16067861-16067964,16070338-16070346,16071428-16071475,
16071581-16071676,16072430-16072533,16073964-16074045,
16076573-16076601,16076708-16076963
Length = 4246
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -3
Query: 423 TCGKCSPKQKQLIKTVIKAVIERHPEAWEELVNKYDKDRKF 301
T GK LI ++ + RH EAWE V +D KF
Sbjct: 2560 THGKFETMNAVLICSISASTFNRHLEAWEPFVEPFDGIFKF 2600
>11_06_0766 -
27115441-27115760,27115878-27116025,27116213-27117417,
27117510-27117753,27120181-27120357
Length = 697
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/73 (26%), Positives = 34/73 (46%)
Frame = -3
Query: 483 GPCTPDAKEFKKVIPEALETTCGKCSPKQKQLIKTVIKAVIERHPEAWEELVNKYDKDRK 304
G T A + K V+ +++E+ P +Q ++ I +E PEAW++ + +
Sbjct: 137 GKSTEAANQCKSVL-DSVESMFQNGPPDIEQKLQETINKSVELLPEAWKQAGSHQEALAS 195
Query: 303 FRPSFDKFINEDD 265
+R S N DD
Sbjct: 196 YRRSLLSQWNLDD 208
>02_01_0344 + 2467191-2468282
Length = 363
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -3
Query: 417 GKCSPKQKQLIKTVIKAVIERHPEAWEELVNK 322
G+ K L+K ++K IE HP+ W E++++
Sbjct: 169 GQAELSNKTLLK-IVKKKIEEHPKRWHEVLSE 199
>02_05_0235 -
27068516-27069032,27069697-27069788,27070056-27070289,
27071569-27071676,27071796-27071855,27072368-27072443,
27072550-27072710,27076919-27076981,27077061-27077148,
27077568-27078308,27078406-27079033,27079314-27079368,
27082073-27083527
Length = 1425
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = -1
Query: 239 LALVRSMSNGNHSPSGGPYGRLTXRGNKKNILVSS*LSETLDILSSIN*DS*HVLSD 69
L V + S G H P+ T + + + LSETL + S+ DS HV++D
Sbjct: 314 LCAVLAASRGAHDPALWLAAPFTFEELDSLVYLKAALSETLRLYPSVPEDSKHVVAD 370
>01_01_0585 -
4328725-4329030,4329333-4329551,4329752-4329820,
4329925-4331469,4332220-4332429,4332563-4332713,
4332791-4333031,4333898-4333956,4334379-4334653,
4334813-4334955,4335034-4335088,4335181-4335258,
4335351-4335478,4335533-4335575
Length = 1173
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = -3
Query: 483 GPCTPDAKEFKKVIPEALETTCGKCSP-KQKQLIKTVIKAVIERHPEAWEELVN 325
G T D+++F + I + +++ C P K+K+L+ V+ + HPE +V+
Sbjct: 68 GQFTADSEQFPEDIAQLIQS----CYPSKEKRLVDEVLATFVLHHPEHGHAVVH 117
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,628,543
Number of Sequences: 37544
Number of extensions: 301021
Number of successful extensions: 769
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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