Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_A16
(413 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0339 - 22400534-22400647,22401264-22401398,22401491-224015... 31 0.28
08_02_1576 + 27965862-27965864,27965952-27966026,27966113-279662... 31 0.28
03_05_0586 - 25875703-25876332,25876426-25876713,25877064-258771... 31 0.36
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249... 29 1.5
05_04_0220 - 19167485-19169290 28 3.4
06_03_1117 + 27750291-27750338,27751360-27751812,27751987-277521... 27 4.5
04_03_0989 - 21475147-21475361,21477029-21477074,21477364-21479292 27 4.5
03_02_0025 + 5084003-5084303,5084449-5084639,5084793-5084873,508... 27 4.5
01_01_0085 - 639959-640192,640290-640379,640465-640521,640826-64... 27 4.5
10_05_0041 - 8469769-8470164 27 5.9
07_01_0391 - 2967823-2967975,2968773-2968961 27 5.9
04_04_0176 - 23329589-23331043 27 5.9
02_05_0717 + 31190626-31191234,31191954-31192394,31192699-311928... 27 5.9
10_01_0146 - 1719997-1720386,1721498-1721515 27 7.8
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 27 7.8
>09_06_0339 -
22400534-22400647,22401264-22401398,22401491-22401565,
22401646-22401648
Length = 108
Score = 31.5 bits (68), Expect = 0.28
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = -2
Query: 196 EVPQYKLITPAXVXERLKVRG 134
EVP+YK ITP+ + ERL++ G
Sbjct: 54 EVPKYKQITPSVLSERLRING 74
Score = 27.5 bits (58), Expect = 4.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 248 LNNQVLFDKPTYEKLXQGSP 189
+NN VLFD+ TY+KL P
Sbjct: 37 VNNSVLFDQATYDKLLSEVP 56
>08_02_1576 +
27965862-27965864,27965952-27966026,27966113-27966247,
27967080-27967193
Length = 108
Score = 31.5 bits (68), Expect = 0.28
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = -2
Query: 196 EVPQYKLITPAXVXERLKVRG 134
EVP+YK ITP+ + ERL++ G
Sbjct: 54 EVPKYKQITPSVLSERLRING 74
Score = 27.5 bits (58), Expect = 4.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 248 LNNQVLFDKPTYEKLXQGSP 189
+NN VLFD+ TY+KL P
Sbjct: 37 VNNSVLFDQATYDKLLSEVP 56
>03_05_0586 -
25875703-25876332,25876426-25876713,25877064-25877194,
25877299-25877812
Length = 520
Score = 31.1 bits (67), Expect = 0.36
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -3
Query: 357 REGFGQTASKNTEEEGRIRWRQSQEEEVVQRKSS*QVEQPGV 232
R G G + + E G+ +WR+ +EEE Q+K + E+ V
Sbjct: 345 RGGRGGESEERRRERGKGKWREEEEEEEEQQKGQEEEEEEQV 386
>11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,
2496476-2496577,2496853-2497003,2497173-2497222,
2497432-2497557,2497761-2497863,2498104-2498204,
2498540-2498677,2498768-2498911,2499028-2499103,
2499224-2499309,2499432-2499560,2500572-2500674,
2500776-2500843,2500912-2501013,2501432-2501527,
2501723-2501848,2502152-2502254,2502427-2502569,
2503017-2503154,2503248-2503391,2503535-2503610,
2503883-2503968,2504135-2504212,2505180-2505254,
2505362-2505496,2506240-2506272,2507886-2507905,
2508570-2508666,2508899-2509000,2510612-2510725
Length = 1126
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -1
Query: 248 LNNQVLFDKPTYEKLXQGSP 189
+NN VLFDK TY+KL P
Sbjct: 971 VNNSVLFDKATYDKLLSEVP 990
Score = 27.9 bits (59), Expect = 3.4
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -2
Query: 196 EVPQYKLITPAXVXERLK 143
EVP+YK ITP+ + ERL+
Sbjct: 988 EVPKYKQITPSVLSERLR 1005
>05_04_0220 - 19167485-19169290
Length = 601
Score = 27.9 bits (59), Expect = 3.4
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +2
Query: 14 CDWIIALGRTRCLSPAHVCWTPCLMXP 94
C+ + GR RCL P H C P P
Sbjct: 304 CEEVDDAGRYRCLEPQHPCEAPWCAGP 330
>06_03_1117 +
27750291-27750338,27751360-27751812,27751987-27752161,
27752227-27752551,27752705-27752786,27752820-27752889,
27753341-27753420,27753514-27753750
Length = 489
Score = 27.5 bits (58), Expect = 4.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -3
Query: 351 GFGQTASKNTEEEGRIRWRQSQEEEVVQRKSS*QVEQPG 235
GFG S N+ +RWR + +++ Q Q ++PG
Sbjct: 427 GFGIAISANSMLVEYLRWRSRRNQQLAQTVDDGQRQEPG 465
>04_03_0989 - 21475147-21475361,21477029-21477074,21477364-21479292
Length = 729
Score = 27.5 bits (58), Expect = 4.5
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 260 LFLWTTSSSWLCRHRILPSSSVFFEAVWPKPSRPSWAASL 379
+F W S L R+R+L + F+A+ P + SWAA L
Sbjct: 65 VFTWNCMVSGLIRNRMLAEARKVFDAM-PVRNSVSWAALL 103
>03_02_0025 +
5084003-5084303,5084449-5084639,5084793-5084873,
5084972-5085319,5085409-5086293
Length = 601
Score = 27.5 bits (58), Expect = 4.5
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -3
Query: 369 AQEGREGFGQTASKNTEEEGRIRWRQSQEEE 277
A+E EG G K EEE R R R+ +EEE
Sbjct: 468 AEEEEEGGGGKGEKEREEEER-RQREKEEEE 497
>01_01_0085 -
639959-640192,640290-640379,640465-640521,640826-640858,
640972-641046,641141-641230,641343-641444,641643-641713,
642243-642396,642497-642573,643077-643113
Length = 339
Score = 27.5 bits (58), Expect = 4.5
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = +3
Query: 15 ATGSSPLVARVVSHLPMXVGLPV 83
A GSS LV R VS LP LPV
Sbjct: 222 AIGSSELVVRRVSSLPQSTALPV 244
>10_05_0041 - 8469769-8470164
Length = 131
Score = 27.1 bits (57), Expect = 5.9
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -3
Query: 372 AAQEGREGFGQTASKNTEEEGRIRWRQSQEEEV 274
A + GREG G+ +S ++ R RW+ +++
Sbjct: 31 ARERGREGGGEASSTTIDDGERRRWQDGLRDDL 63
>07_01_0391 - 2967823-2967975,2968773-2968961
Length = 113
Score = 27.1 bits (57), Expect = 5.9
Identities = 19/47 (40%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = +2
Query: 5 HSXCDWIIALGRTRCLSPAHVCWTPCLMXPFSLSSMXALL-ARVTSD 142
+S W G R P CW P LM LS ALL A V SD
Sbjct: 9 YSSASWCRGGGGRRRQPPLLSCWCPLLMIAELLSIGSALLVAMVISD 55
>04_04_0176 - 23329589-23331043
Length = 484
Score = 27.1 bits (57), Expect = 5.9
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = -3
Query: 411 NEFGRPMSFQFKDAAQEGREGFGQTASKNTEEEGRIRWRQSQEEEVVQR 265
N G + + GR+GF + EE GR R R +EE +R
Sbjct: 388 NANGNERGYPDRRQCGRGRDGFDLSRKHGHEERGRYRPRVLEEEREHER 436
>02_05_0717 +
31190626-31191234,31191954-31192394,31192699-31192802,
31193000-31194384,31194508-31194548,31195065-31195133,
31195335-31195435,31195747-31195825,31195939-31196037,
31196119-31196187,31197609-31197658,31197749-31197925,
31198045-31198152,31198224-31198290
Length = 1132
Score = 27.1 bits (57), Expect = 5.9
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = -3
Query: 402 GRPMSFQFKDAAQEGREGFGQTASKNTEEEGRIRWRQSQEEEVVQRKSS*QVE 244
G P S A+E R+ ++ EEE R+SQEEE V+ Q E
Sbjct: 77 GSPFSSSVGSGAEERRQSVAAERRRSQEEEW--ERRRSQEEEAVREMRRSQEE 127
>10_01_0146 - 1719997-1720386,1721498-1721515
Length = 135
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 343 PNSLKKHRRRRKDPVAAKPRRRS 275
P+ + RRRR +P +PRRR+
Sbjct: 83 PDDGGQRRRRRSEPATTQPRRRA 105
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +2
Query: 14 CDWIIALGRTRCLSPAHVCWTP 79
CD + G +CLSP H C P
Sbjct: 443 CDKRLRCGNHKCLSPCHRCHGP 464
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,291,584
Number of Sequences: 37544
Number of extensions: 230480
Number of successful extensions: 710
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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