Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_A16
         (413 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal prote...    33   0.062
U41272-9|AAA82452.4| 1256|Caenorhabditis elegans Prion-like-(q/n...    31   0.44 
Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical p...    29   1.0  
AC006747-2|AAF60508.1|  264|Caenorhabditis elegans Hypothetical ...    27   5.4  
Z75554-11|CAA99961.1|  301|Caenorhabditis elegans Hypothetical p...    27   7.1  
U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily ass...    27   7.1  
DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.      27   7.1  
Z82283-4|CAB05286.1|  689|Caenorhabditis elegans Hypothetical pr...    26   9.4  
AL033514-35|CAE18033.1|  106|Caenorhabditis elegans Hypothetical...    26   9.4  
AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical...    26   9.4  
AC006670-2|ABC71822.1|  901|Caenorhabditis elegans Patched relat...    26   9.4  
AC006659-2|AAF39883.2|  977|Caenorhabditis elegans Hypothetical ...    26   9.4  

>U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 25 protein.
          Length = 117

 Score = 33.5 bits (73), Expect = 0.062
 Identities = 16/21 (76%), Positives = 17/21 (80%)
 Frame = -2

Query: 199 KEVPQYKLITPAXVXERLKVR 137
           KEV  YKLITP+ V ERLKVR
Sbjct: 56  KEVITYKLITPSVVSERLKVR 76



 Score = 29.5 bits (63), Expect = 1.0
 Identities = 19/57 (33%), Positives = 21/57 (36%)
 Frame = -1

Query: 374 MPPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXKLNNQVLFDKPTYEKL 204
           MPPKKD K     P                            LNN VLFD+ TY+KL
Sbjct: 1   MPPKKDPKGGKAPPSKKKEGSGGGKAKKKKWSKGKVRDK---LNNMVLFDQATYDKL 54


>U41272-9|AAA82452.4| 1256|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 62
            protein.
          Length = 1256

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -3

Query: 405  FGRPMSFQFKDAAQEGREGFGQTASKNTEEEGRIRWRQSQEEEVVQRKS 259
            + R M+FQ +++ QE        A  NT ++     + SQ  EVV ++S
Sbjct: 1072 YSRNMAFQQENSPQEITYSMSNGAESNTSQQNESPLQNSQHSEVVSKQS 1120


>Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical
           protein C53A5.13 protein.
          Length = 681

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 363 EGREGFGQTASKNTEEEGRIRWRQSQEEEVVQRK 262
           E REG G    +   +  RIRW+   +EE+V R+
Sbjct: 25  EDREGDGVDVIEVRNDAIRIRWKHDSDEEIVTRQ 58


>AC006747-2|AAF60508.1|  264|Caenorhabditis elegans Hypothetical
           protein Y39A3A.2 protein.
          Length = 264

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -3

Query: 396 PMSFQFKDAAQEGREGFG 343
           P++F+F+D   +GRE +G
Sbjct: 217 PLNFEFEDETHDGRENYG 234


>Z75554-11|CAA99961.1|  301|Caenorhabditis elegans Hypothetical
           protein ZC455.8a protein.
          Length = 301

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 179 LVLWDFLXTVSHMWVYQTTPGCSTC 253
           LVLW  L  V + WV   +P   TC
Sbjct: 136 LVLWGMLEDVMYFWVCNISPFEKTC 160


>U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 326 protein.
          Length = 560

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 322 RRRRKDPVAAKPRRRSGP 269
           RRR+  P+ A PRRR  P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495


>DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.
          Length = 560

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 322 RRRRKDPVAAKPRRRSGP 269
           RRR+  P+ A PRRR  P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495


>Z82283-4|CAB05286.1|  689|Caenorhabditis elegans Hypothetical
           protein T23G4.4 protein.
          Length = 689

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 37  SHALSLTCPCXLDSLFDXPFF 99
           S  ++L  PC L+S+F  PFF
Sbjct: 270 SFTVTLILPCPLESIFVRPFF 290


>AL033514-35|CAE18033.1|  106|Caenorhabditis elegans Hypothetical
           protein Y75B8A.37 protein.
          Length = 106

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 320 SVFFEAVWPKPSR 358
           S+FF A+WPKP R
Sbjct: 71  SLFFVAIWPKPVR 83


>AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.1 protein.
          Length = 751

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
 Frame = +2

Query: 224 YQTTPGCS----TCHELFLWTTSSSWLCRHRIL 310
           YQ    CS    TC   F W     W CR R++
Sbjct: 365 YQPVRHCSEQDATCDSPFYWCDMKLWRCRSRVV 397


>AC006670-2|ABC71822.1|  901|Caenorhabditis elegans Patched related
           family protein12, isoform a protein.
          Length = 901

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +3

Query: 138 RTFNLSXTXAGVISLYCGTSLXQFLICGFIKQHLVVQLVTNFS 266
           R   LS +      +  G SL  FLI GF+   +V  + T FS
Sbjct: 260 RVLTLSTSYVEAEVVRAGMSLLPFLIVGFVIMAIVSSVTTFFS 302


>AC006659-2|AAF39883.2|  977|Caenorhabditis elegans Hypothetical
           protein H16O14.1 protein.
          Length = 977

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 314 SSSVFFEAVWPKPSRPSWAASLNWKDIGRPN 406
           +S VFF+ +WPK  R     S + KD G  N
Sbjct: 251 ASGVFFDNLWPKYLRAGEVLSKDRKDKGDLN 281


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,242,667
Number of Sequences: 27780
Number of extensions: 187096
Number of successful extensions: 488
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)