Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_A15
(419 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0382 - 22501041-22501279,22501717-22501810 30 0.87
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 30 0.87
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 29 2.0
06_01_1084 + 8883301-8883515,8883736-8884063,8884764-8885022,888... 29 2.0
07_03_0533 - 19178296-19178516,19178790-19178847,19179315-191793... 28 2.7
10_08_0689 + 19912040-19912186,19912483-19912548 28 3.5
03_06_0471 + 34169562-34169892,34170121-34170347 27 4.6
01_01_1145 + 9073973-9074281,9075440-9075998,9076088-9076241,907... 27 4.6
10_01_0239 + 2502980-2503462 27 6.1
11_01_0487 - 3763233-3763733,3763827-3764279,3765270-3765392,376... 27 8.1
06_02_0342 + 14789190-14789205,14789868-14789891,14789968-147901... 27 8.1
06_01_0567 - 4004743-4004957,4005565-4005649,4006292-4006478,400... 27 8.1
05_04_0175 - 18742156-18743592 27 8.1
03_05_0487 + 24838620-24838967,24840526-24840747,24840819-248411... 27 8.1
02_05_1086 + 33994295-33994402,33994485-33994674,33994734-339947... 27 8.1
>02_04_0382 - 22501041-22501279,22501717-22501810
Length = 110
Score = 29.9 bits (64), Expect = 0.87
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Frame = -3
Query: 348 KFFMIFVLALLA--MANAQVVINDPDPFFAQPTVGNGYEPIDNRPYIVNPPKDYNPNGNG 175
K ++F L L A +A+A+ +D D P +E P +PP P+ +
Sbjct: 11 KALLVFALLLAAAFVASAEQTHDDGD----NPPESPDHEDPPPSPEYYDPP----PSPDY 62
Query: 174 YEPIDNGAYYVDRPQGRPYFKPTPXP 97
Y+P + YY D P Y+ P P P
Sbjct: 63 YDPPHSPDYY-DPPPSPDYYDPPPSP 87
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 29.9 bits (64), Expect = 0.87
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Frame = -3
Query: 264 QPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDRPQGRPYFKPTP 103
QP Y P + P V PP Y P +G P N + Y + P GRP P P
Sbjct: 387 QPEEAMSYAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVGRPNSGPPP 442
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 28.7 bits (61), Expect = 2.0
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Frame = -3
Query: 282 PDPFFAQPTVGNGYEPI-DNRPYIVNPPKDY---NPNGNGYEPIDNGAYYVDRPQGRPYF 115
P P+ QP G Y P Y P ++ P Y P G Y +PQG+PY
Sbjct: 229 PQPYPPQPQ-GQTYPPQPQGETYQPQPQRETYPPQPQVQPYPPKPQGQPYPPQPQGQPY- 286
Query: 114 KPTP 103
P P
Sbjct: 287 PPQP 290
>06_01_1084 +
8883301-8883515,8883736-8884063,8884764-8885022,
8885581-8885681
Length = 300
Score = 28.7 bits (61), Expect = 2.0
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -1
Query: 131 KADLTSSRPLDPGARGGKERRDEKMKN 51
++D + R L+ GA GG ER+ E+MKN
Sbjct: 81 RSDYSGGRKLEAGA-GGDERKKEQMKN 106
>07_03_0533 -
19178296-19178516,19178790-19178847,19179315-19179370,
19179527-19179646,19180446-19180599,19180911-19181018,
19181134-19181197,19181342-19181518,19181679-19181824,
19181912-19181941,19181999-19182150,19182266-19182347
Length = 455
Score = 28.3 bits (60), Expect = 2.7
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -1
Query: 119 TSSRPLDP-GARGGKERRDEKMKNERMDEQE 30
T S+ DP GA KER+++K + MDE E
Sbjct: 387 TKSKQPDPVGAEVRKERKEKKNRTSEMDEDE 417
>10_08_0689 + 19912040-19912186,19912483-19912548
Length = 70
Score = 27.9 bits (59), Expect = 3.5
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -1
Query: 191 TLMETATNLSTTVHIT-WTXPKADLTSSRPLDPG 93
T ++T+ + S +T W +A+L SSRPL PG
Sbjct: 3 TELDTSLSASGMTLLTAWVSYRANLASSRPLTPG 36
>03_06_0471 + 34169562-34169892,34170121-34170347
Length = 185
Score = 27.5 bits (58), Expect = 4.6
Identities = 16/49 (32%), Positives = 19/49 (38%)
Frame = -3
Query: 243 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPXP 97
Y P P PP Y P+ GY P GAY +P + P P
Sbjct: 56 YPPAGGYPGAQYPPSGYPPSQGGYPP---GAYPPSGYPQQPGYPPAGYP 101
>01_01_1145 +
9073973-9074281,9075440-9075998,9076088-9076241,
9077475-9077565,9077722-9077793,9077879-9078390,
9078854-9078923,9079514-9079579,9080266-9080570,
9080872-9081006,9081141-9081204,9081429-9081574,
9081669-9081773,9082310-9082490
Length = 922
Score = 27.5 bits (58), Expect = 4.6
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -3
Query: 252 GNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPT-PXP 97
G+G +N+ Y N PK +P NG Y P G+P++ P P P
Sbjct: 113 GHGNPNKNNQAYHRNGPKRRSPAANGTPSYPAAMPYHQHP-GQPFYYPVIPSP 164
>10_01_0239 + 2502980-2503462
Length = 160
Score = 27.1 bits (57), Expect = 6.1
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 220 RAVVNRFVAVSYSRLGKEWIGVIDHNLSVGHSQQSEDENHEEF 348
R N ++ GK + G+ID N +V + S ++ EEF
Sbjct: 42 RTTSNYSTSLGNGSFGKVYNGIIDDNTAVAVKRYSRIDSEEEF 84
>11_01_0487 - 3763233-3763733,3763827-3764279,3765270-3765392,
3765822-3766122,3766283-3766644,3767117-3767713,
3768323-3769447
Length = 1153
Score = 26.6 bits (56), Expect = 8.1
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -1
Query: 122 LTSSRPLDPGARGGKERRDEKMKNERMDE 36
L +++P P A+ +E +EK +NE +DE
Sbjct: 1082 LKAAKPKVPPAKTKEEEEEEKKQNEDLDE 1110
>06_02_0342 +
14789190-14789205,14789868-14789891,14789968-14790128,
14790218-14790335,14790658-14790735,14790819-14790938,
14791380-14791430,14791576-14791883
Length = 291
Score = 26.6 bits (56), Expect = 8.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 361 SYKNEILHDFRPRSAGYGQRSSCD 290
SY E++ FRP +A YG SS D
Sbjct: 191 SYCPELMSGFRPYTASYGDISSFD 214
>06_01_0567 -
4004743-4004957,4005565-4005649,4006292-4006478,
4006586-4006701,4006792-4006974
Length = 261
Score = 26.6 bits (56), Expect = 8.1
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -1
Query: 104 LDPGARGGKERRDEKMKNERMDEQEIAKFH 15
LD AR KER D+K++++R E I + H
Sbjct: 75 LDSNAREAKERLDQKLRSQR--ESVIKRHH 102
>05_04_0175 - 18742156-18743592
Length = 478
Score = 26.6 bits (56), Expect = 8.1
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 277 IGVIDHNLSVGHSQQSEDENHEE 345
+G ++H++ V H Q +E+E EE
Sbjct: 69 VGQLEHDVVVRHGQAAEEEEEEE 91
>03_05_0487 +
24838620-24838967,24840526-24840747,24840819-24841109,
24841316-24841513,24841641-24841705,24841788-24841874,
24841988-24842108,24842200-24842244,24842321-24842458,
24842571-24842643,24842723-24842799,24842882-24842989,
24843108-24843224,24843524-24843679,24843780-24843881,
24844036-24844161,24844237-24844314,24844390-24844485,
24844592-24844707,24844781-24844850,24844930-24844983,
24845062-24845205,24845297-24845596,24845780-24846202,
24846316-24846429
Length = 1222
Score = 26.6 bits (56), Expect = 8.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 95 GARGGKERRDEKMKNERMDEQEIAK 21
GA GG+E DE+ + DE+EI +
Sbjct: 32 GAVGGEEMEDEEADGDAPDEEEITQ 56
>02_05_1086 +
33994295-33994402,33994485-33994674,33994734-33994789,
33995413-33995550,33995655-33995848,33996125-33996467
Length = 342
Score = 26.6 bits (56), Expect = 8.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 104 LDPGARGGKERRDEKMKNERMDEQEIAKFH 15
LD R KER D+K++++R + K H
Sbjct: 201 LDSNVREAKERLDQKLRSQRESAVVVVKRH 230
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,115,850
Number of Sequences: 37544
Number of extensions: 242117
Number of successful extensions: 692
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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