Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_A13
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    28   1.1  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    27   2.6  
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    26   3.4  
SPAC688.02c |mis14||kinetochore protein Mis14 |Schizosaccharomyc...    26   4.5  
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo...    25   7.9  

>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 56  ILPDNTIVVCYVFNIRLDRTWLL*YFPSRVTPNVLSIPQV 175
           ILPD+    C +  I +  T L   FPS++TP V++  ++
Sbjct: 248 ILPDSCGYFCIMGEIAMTLTKLRELFPSKLTPYVVTFVEL 287


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = -1

Query: 391 PIADDSLENSSFVNSTAFPFSITNKLRSKSTNVHYMGNPDLMPIASYESTILVRILHQIS 212
           P   + + + S  NS  F   I N LRSKS N H +   + +P           +  ++S
Sbjct: 10  PNLPNLIHSESITNSPVF---IPN-LRSKSDNKHRLNTSEELPFTKKRRATKHFLKMEVS 65

Query: 211 TKINE 197
            KI+E
Sbjct: 66  AKISE 70


>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 376 SLENSSFVNSTAFPFSITNKLRSKSTNVHYMGNPDLMPIASY 251
           +L +S  +N+  +PFS  N   S  TN  Y+   D +  ASY
Sbjct: 628 TLRSSVDLNTPEYPFSNRNDSDSTFTNNKYVSPWDAIEEASY 669


>SPAC688.02c |mis14||kinetochore protein Mis14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 210

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 220 QISTKINELYEPTFANLWNRQDIWGYAAREVLQKP 116
           ++   +NEL E TF+ +     I G+ A   LQ P
Sbjct: 59  RVKEMLNELIESTFSIIQENVTINGFDANSALQDP 93


>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
           Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 457

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 121 KPCTIQTYVKDITNHYRVIRQD 56
           KP  IQ+ +K I++H+R  RQ+
Sbjct: 192 KPSGIQSMLKVISSHFRPYRQE 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,342,958
Number of Sequences: 5004
Number of extensions: 46670
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)