Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_A13
(574 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY058593-1|AAL13822.1| 767|Drosophila melanogaster LD28817p pro... 59 4e-09
AE014297-1398|AAF54712.1| 767|Drosophila melanogaster CG6962-PA... 59 4e-09
X98882-1|CAA67385.1| 391|Drosophila melanogaster nuclear hormon... 28 7.8
X98881-1|CAA67384.1| 865|Drosophila melanogaster nuclear hormon... 28 7.8
U01088-1|AAA19976.2| 390|Drosophila melanogaster truncated nucl... 28 7.8
U01087-1|AAA19975.1| 864|Drosophila melanogaster nuclear hormon... 28 7.8
AF238309-1|AAF69495.1| 385|Drosophila melanogaster nuclear rece... 28 7.8
AF238308-1|AAF69494.1| 866|Drosophila melanogaster nuclear rece... 28 7.8
AE014296-3500|AAS65087.1| 338|Drosophila melanogaster CG18023-P... 28 7.8
AE014296-3499|AAN12161.3| 392|Drosophila melanogaster CG18023-P... 28 7.8
AE014296-3498|AAF51692.2| 862|Drosophila melanogaster CG18023-P... 28 7.8
AE014135-30|ABC65827.1| 4056|Drosophila melanogaster CG33978-PA ... 28 7.8
>AY058593-1|AAL13822.1| 767|Drosophila melanogaster LD28817p
protein.
Length = 767
Score = 59.3 bits (137), Expect = 4e-09
Identities = 47/151 (31%), Positives = 72/151 (47%), Gaps = 10/151 (6%)
Frame = -1
Query: 514 TQDESDGHLEEVKKVPTYLNTSIHNFAVIFGLSEALL-----LPSEPIADDS--LENSSF 356
TQ+E L E ++P L I F F + +A L LP EP + ++N SF
Sbjct: 553 TQEEVT--LREFSRIPEVLRQCIDAFCRTFNVDQANLSMHETLPEEPSVPSAPAVQNFSF 610
Query: 355 VN-STAFPFSITN--KLRSKSTNVHYMGNPDLMPIASYESTILVRILHQISTKINELYEP 185
+ S S N ++ ++++H +P +PI + E LVR+LH +S KIN Y
Sbjct: 611 FDASDTLDTSKLNPHQMSLNASSLHAAVDPATLPIQTNEVRALVRMLHFVSEKINNKYGS 670
Query: 184 TFANLWNRQDIWGYAAREVLQKPCTIQTYVK 92
+ R D +G AR++L P T Q + K
Sbjct: 671 QLQGFYVRDDYFGKVARQLLYAPMTEQWFDK 701
>AE014297-1398|AAF54712.1| 767|Drosophila melanogaster CG6962-PA
protein.
Length = 767
Score = 59.3 bits (137), Expect = 4e-09
Identities = 47/151 (31%), Positives = 72/151 (47%), Gaps = 10/151 (6%)
Frame = -1
Query: 514 TQDESDGHLEEVKKVPTYLNTSIHNFAVIFGLSEALL-----LPSEPIADDS--LENSSF 356
TQ+E L E ++P L I F F + +A L LP EP + ++N SF
Sbjct: 553 TQEEVT--LREFSRIPEVLRQCIDAFCRTFNVDQANLSMHETLPEEPSVPSAPAVQNFSF 610
Query: 355 VN-STAFPFSITN--KLRSKSTNVHYMGNPDLMPIASYESTILVRILHQISTKINELYEP 185
+ S S N ++ ++++H +P +PI + E LVR+LH +S KIN Y
Sbjct: 611 FDASDTLDTSKLNPHQMSLNASSLHAAVDPATLPIQTNEVRALVRMLHFVSEKINNKYGS 670
Query: 184 TFANLWNRQDIWGYAAREVLQKPCTIQTYVK 92
+ R D +G AR++L P T Q + K
Sbjct: 671 QLQGFYVRDDYFGKVARQLLYAPMTEQWFDK 701
>X98882-1|CAA67385.1| 391|Drosophila melanogaster nuclear hormone
receptor protein.
Length = 391
Score = 28.3 bits (60), Expect = 7.8
Identities = 22/77 (28%), Positives = 32/77 (41%)
Frame = +2
Query: 59 LPDNTIVVCYVFNIRLDRTWLL*YFPSRVTPNVLSIPQVCERWFIQFIYFS*NLMQYSD* 238
+P N I ++ + WL F +RVTP V I + +R F F+ D
Sbjct: 170 VPQNGIASTVAESLEFQKIWLWQQFSARVTPGVQRIVEFAKR-VPGFCDFT------QDD 222
Query: 239 NRTFIGCYGHEVWITHI 289
I EVW+TH+
Sbjct: 223 QLILIKLGFFEVWLTHV 239
>X98881-1|CAA67384.1| 865|Drosophila melanogaster nuclear hormone
receptor protein.
Length = 865
Score = 28.3 bits (60), Expect = 7.8
Identities = 22/77 (28%), Positives = 32/77 (41%)
Frame = +2
Query: 59 LPDNTIVVCYVFNIRLDRTWLL*YFPSRVTPNVLSIPQVCERWFIQFIYFS*NLMQYSD* 238
+P N I ++ + WL F +RVTP V I + +R F F+ D
Sbjct: 644 VPQNGIASTVAESLEFQKIWLWQQFSARVTPGVQRIVEFAKR-VPGFCDFT------QDD 696
Query: 239 NRTFIGCYGHEVWITHI 289
I EVW+TH+
Sbjct: 697 QLILIKLGFFEVWLTHV 713
>U01088-1|AAA19976.2| 390|Drosophila melanogaster truncated nuclear
hormone receptorsuperfamily protein protein.
Length = 390
Score = 28.3 bits (60), Expect = 7.8
Identities = 22/77 (28%), Positives = 32/77 (41%)
Frame = +2
Query: 59 LPDNTIVVCYVFNIRLDRTWLL*YFPSRVTPNVLSIPQVCERWFIQFIYFS*NLMQYSD* 238
+P N I ++ + WL F +RVTP V I + +R F F+ D
Sbjct: 170 VPQNGIASTVAESLEFQKIWLWQQFSARVTPGVQRIVEFAKR-VPGFCDFT------QDD 222
Query: 239 NRTFIGCYGHEVWITHI 289
I EVW+TH+
Sbjct: 223 QLILIKLGFFEVWLTHV 239
>U01087-1|AAA19975.1| 864|Drosophila melanogaster nuclear hormone
receptor superfamilyprotein protein.
Length = 864
Score = 28.3 bits (60), Expect = 7.8
Identities = 22/77 (28%), Positives = 32/77 (41%)
Frame = +2
Query: 59 LPDNTIVVCYVFNIRLDRTWLL*YFPSRVTPNVLSIPQVCERWFIQFIYFS*NLMQYSD* 238
+P N I ++ + WL F +RVTP V I + +R F F+ D
Sbjct: 644 VPQNGIASTVAESLEFQKIWLWQQFSARVTPGVQRIVEFAKR-VPGFCDFT------QDD 696
Query: 239 NRTFIGCYGHEVWITHI 289
I EVW+TH+
Sbjct: 697 QLILIKLGFFEVWLTHV 713
>AF238309-1|AAF69495.1| 385|Drosophila melanogaster nuclear
receptor E78B protein.
Length = 385
Score = 28.3 bits (60), Expect = 7.8
Identities = 22/77 (28%), Positives = 32/77 (41%)
Frame = +2
Query: 59 LPDNTIVVCYVFNIRLDRTWLL*YFPSRVTPNVLSIPQVCERWFIQFIYFS*NLMQYSD* 238
+P N I ++ + WL F +RVTP V I + +R F F+ D
Sbjct: 164 VPQNGIASTVAESLEFQKIWLWQQFSARVTPGVQRIVEFAKR-VPGFCDFT------QDD 216
Query: 239 NRTFIGCYGHEVWITHI 289
I EVW+TH+
Sbjct: 217 QLILIKLGFFEVWLTHV 233
>AF238308-1|AAF69494.1| 866|Drosophila melanogaster nuclear
receptor E78A protein.
Length = 866
Score = 28.3 bits (60), Expect = 7.8
Identities = 22/77 (28%), Positives = 32/77 (41%)
Frame = +2
Query: 59 LPDNTIVVCYVFNIRLDRTWLL*YFPSRVTPNVLSIPQVCERWFIQFIYFS*NLMQYSD* 238
+P N I ++ + WL F +RVTP V I + +R F F+ D
Sbjct: 645 VPQNGIASTVAESLEFQKIWLWQQFSARVTPGVQRIVEFAKR-VPGFCDFT------QDD 697
Query: 239 NRTFIGCYGHEVWITHI 289
I EVW+TH+
Sbjct: 698 QLILIKLGFFEVWLTHV 714
>AE014296-3500|AAS65087.1| 338|Drosophila melanogaster CG18023-PC,
isoform C protein.
Length = 338
Score = 28.3 bits (60), Expect = 7.8
Identities = 22/77 (28%), Positives = 32/77 (41%)
Frame = +2
Query: 59 LPDNTIVVCYVFNIRLDRTWLL*YFPSRVTPNVLSIPQVCERWFIQFIYFS*NLMQYSD* 238
+P N I ++ + WL F +RVTP V I + +R F F+ D
Sbjct: 117 VPQNGIASTVAESLEFQKIWLWQQFSARVTPGVQRIVEFAKR-VPGFCDFT------QDD 169
Query: 239 NRTFIGCYGHEVWITHI 289
I EVW+TH+
Sbjct: 170 QLILIKLGFFEVWLTHV 186
>AE014296-3499|AAN12161.3| 392|Drosophila melanogaster CG18023-PB,
isoform B protein.
Length = 392
Score = 28.3 bits (60), Expect = 7.8
Identities = 22/77 (28%), Positives = 32/77 (41%)
Frame = +2
Query: 59 LPDNTIVVCYVFNIRLDRTWLL*YFPSRVTPNVLSIPQVCERWFIQFIYFS*NLMQYSD* 238
+P N I ++ + WL F +RVTP V I + +R F F+ D
Sbjct: 171 VPQNGIASTVAESLEFQKIWLWQQFSARVTPGVQRIVEFAKR-VPGFCDFT------QDD 223
Query: 239 NRTFIGCYGHEVWITHI 289
I EVW+TH+
Sbjct: 224 QLILIKLGFFEVWLTHV 240
>AE014296-3498|AAF51692.2| 862|Drosophila melanogaster CG18023-PA,
isoform A protein.
Length = 862
Score = 28.3 bits (60), Expect = 7.8
Identities = 22/77 (28%), Positives = 32/77 (41%)
Frame = +2
Query: 59 LPDNTIVVCYVFNIRLDRTWLL*YFPSRVTPNVLSIPQVCERWFIQFIYFS*NLMQYSD* 238
+P N I ++ + WL F +RVTP V I + +R F F+ D
Sbjct: 641 VPQNGIASTVAESLEFQKIWLWQQFSARVTPGVQRIVEFAKR-VPGFCDFT------QDD 693
Query: 239 NRTFIGCYGHEVWITHI 289
I EVW+TH+
Sbjct: 694 QLILIKLGFFEVWLTHV 710
>AE014135-30|ABC65827.1| 4056|Drosophila melanogaster CG33978-PA
protein.
Length = 4056
Score = 28.3 bits (60), Expect = 7.8
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = -1
Query: 250 ESTILVRILHQISTKINELYEPTFANLW----NRQDIWGYAAREVLQKPCTIQTYVKDIT 83
E+ + V H IS K L PT++N+W N++ YA+ P Q +K T
Sbjct: 3042 ENKMTVNNRHTISLKSLPLNNPTYSNIWDNSQNKRAKIDYASMLKPAIPINHQKQLKSAT 3101
Query: 82 NHYR 71
H R
Sbjct: 3102 IHSR 3105
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,443,165
Number of Sequences: 53049
Number of extensions: 478352
Number of successful extensions: 961
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2255362491
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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