Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_A13
         (574 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75546-8|CAC42331.2|  640|Caenorhabditis elegans Hypothetical pr...    31   0.44 
U55855-3|AAA98019.2|  893|Caenorhabditis elegans Ubiquitin-like ...    28   5.4  
U28742-2|AAA68332.2|  925|Caenorhabditis elegans Adaptin, alpha ...    27   9.5  
AL110487-7|CAB54431.1|  581|Caenorhabditis elegans Hypothetical ...    27   9.5  

>Z75546-8|CAC42331.2|  640|Caenorhabditis elegans Hypothetical
           protein R05D11.9 protein.
          Length = 640

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -1

Query: 265 PIASYESTILVRILHQISTKINEL-YEPTFANLWNRQDIWGYAAREVLQKP 116
           P  SYE  I V++   ++ K+NEL +     + +++Q + G  AR+V+  P
Sbjct: 511 PTRSYELGIAVKLTTSLAQKLNELSFVQKIGDHYSQQSVIGAIARKVMYPP 561


>U55855-3|AAA98019.2|  893|Caenorhabditis elegans Ubiquitin-like
           protease protein 2 protein.
          Length = 893

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 382 DDSLENSSFVNSTAFPFSITNKLRSKSTNVHYMGNPDLMPIASYE 248
           +D  E  S +   A+   + N L + S N HY  +P+ +  AS+E
Sbjct: 399 EDLTEKISHLGEEAYNIDMANALHAFSDNWHYEIHPNTVHNASFE 443


>U28742-2|AAA68332.2|  925|Caenorhabditis elegans Adaptin, alpha
           chain (clathrinassociated complex) protein 2 protein.
          Length = 925

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = -1

Query: 166 NRQDIWGYAAR---EVLQKPCTIQTYVK 92
           NR+D+ GYAA+   E LQ+P   +  VK
Sbjct: 470 NREDVQGYAAKTVFEALQRPACHENMVK 497


>AL110487-7|CAB54431.1|  581|Caenorhabditis elegans Hypothetical
           protein Y39E4B.10 protein.
          Length = 581

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -1

Query: 499 DGHLEEVKKVPTYLNTSIHNFAVIFGLSEALLLPSEPI 386
           + +L++++ +PT ++ SI NFAV     E L +  E +
Sbjct: 418 EAYLQKIQ-IPTQMSLSIFNFAVFLFCHEELAITEEKV 454


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,884,546
Number of Sequences: 27780
Number of extensions: 259029
Number of successful extensions: 581
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)