Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_A13
         (574 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   5.0  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   5.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   6.6  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 424 GLSEALLLPSEPIADDSLE 368
           GL    +LP EP+A DS++
Sbjct: 58  GLKSFKILPIEPLAVDSVK 76


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 443 VYRCI*ISWHFFYFF 487
           VY  + ++W  FYFF
Sbjct: 75  VYYIVILAWAIFYFF 89


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 78  WFVMSLTYVWIVH 116
           W+V SL  VWI++
Sbjct: 596 WYVPSLDQVWILN 608


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,031
Number of Sequences: 438
Number of extensions: 3154
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)