Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_A12
(839 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc... 67 3e-12
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac... 56 8e-09
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha... 54 2e-08
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 51 2e-07
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 42 1e-04
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 41 3e-04
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 33 0.050
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 30 0.36
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 29 0.62
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c... 29 1.1
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce... 27 3.3
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa... 27 4.4
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos... 27 4.4
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr... 26 5.8
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 26 7.6
>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 66.9 bits (156), Expect = 3e-12
Identities = 31/75 (41%), Positives = 43/75 (57%)
Frame = -3
Query: 828 DKLXVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXIASEYNINSMPTFV 649
DKL V+DF ATWCGPCK I PK ++ + IA+E +++MP+F
Sbjct: 18 DKLVVVDFFATWCGPCKAIAPKFEQF-SNTYSDATFIKVDVDQLSEIAAEAGVHAMPSFF 76
Query: 648 FVKNGKKLDEFSGAN 604
KNG+K++E GAN
Sbjct: 77 LYKNGEKIEEIVGAN 91
>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
Txl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 290
Score = 55.6 bits (128), Expect = 8e-09
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = -3
Query: 813 IDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXI-ASEYNINSMPTFVFVKN 637
+D A WCGPCK I P ++A++ AS + +MPTFVF +N
Sbjct: 24 VDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFFEN 83
Query: 636 GKKLDEFSGAN 604
GK++D +GAN
Sbjct: 84 GKQIDMLTGAN 94
>SPBC12D12.07c |trx2||mitochondrial thioredoxin
Trx2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 54.4 bits (125), Expect = 2e-08
Identities = 26/78 (33%), Positives = 42/78 (53%)
Frame = -3
Query: 834 AGDKLXVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXIASEYNINSMPT 655
+ DK+ V+DF A WCGPCK + P L+++ +E IA + + ++PT
Sbjct: 33 SADKVTVVDFYADWCGPCKYLKPFLEKL-SEQNQKASFIAVNADKFSDIAQKNGVYALPT 91
Query: 654 FVFVKNGKKLDEFSGANV 601
V + G++LD GA+V
Sbjct: 92 MVLFRKGQELDRIVGADV 109
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 51.2 bits (117), Expect = 2e-07
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = -3
Query: 828 DKLXVIDFMATWCGPCKMIGPKLDEIAAEM-XXXXXXXXXXXXXXXXIASEYNINSMPTF 652
DK+ ++ F A WCG CK + P+ + A E+ + SEY+I PT
Sbjct: 39 DKVLMVKFYAPWCGHCKALAPEYESAADELEKDGISLVEVDCTEEGDLCSEYSIRGYPTL 98
Query: 651 VFVKNGKKLDEFSG 610
KNGK++ ++SG
Sbjct: 99 NVFKNGKQISQYSG 112
Score = 34.7 bits (76), Expect = 0.017
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = -3
Query: 816 VIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKN 637
+++F A WCG CK + P +++A E S +I+ PT +F K
Sbjct: 377 LVEFYAPWCGHCKNLAPTYEKLAEEYSDDSNVVVAKIDATENDIS-VSISGFPTIMFFKA 435
Query: 636 GKKLD 622
K++
Sbjct: 436 NDKVN 440
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 41.5 bits (93), Expect = 1e-04
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = -3
Query: 828 DKLXVIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXIASEYNINSMPTFV 649
+++ +++F A W PCK + D+ A + A +++N++P FV
Sbjct: 20 EQIILLNFYAPWAAPCKQMNQVFDQFAKDTKNAVFLKIEAEKFSDI-AESFDVNAVPLFV 78
Query: 648 FVKNGKKLDEFSGAN 604
+ K L SGAN
Sbjct: 79 LIHGAKVLARISGAN 93
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 40.7 bits (91), Expect = 3e-04
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = -3
Query: 834 AGDKLXVIDFMATWCGPCKMIGPKLDEIAA--EMXXXXXXXXXXXXXXXXIASEYNINSM 661
A K +I+F ATWCG CK + P +E+ A E +A +Y+I
Sbjct: 37 ASKKGALIEFYATWCGHCKSLAPVYEELGALFEDHNDVLIGKIDADTHSDVADKYHITGF 96
Query: 660 PTFV-FVKNGKKLDEFSGA 607
PT + F +G + ++S A
Sbjct: 97 PTLIWFPPDGSEPVQYSNA 115
Score = 28.3 bits (60), Expect = 1.4
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -3
Query: 816 VIDFMATWCGPCKMIGPKLDEI 751
+++F A WCG CK + P + +
Sbjct: 162 LVEFYADWCGYCKRLAPTYETL 183
>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 127
Score = 33.1 bits (72), Expect = 0.050
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Frame = +2
Query: 434 KLISSNSLQTLKTFFIYIL-KTYTCFFFKFHLSFHRRLRTTLVSIYLCLRIVVL---SLS 601
+L++ +S + + +Y+L KTYT +FF SF R ++ L+ C + L
Sbjct: 12 ELLNDSSSNMIWLYEVYMLYKTYTSYFFMSSKSFVRGVKRYLIYFCYCANFIALFRVIFG 71
Query: 602 TLAPENSSSFLPFLT 646
T+ + PF+T
Sbjct: 72 TIFVYSPDGITPFMT 86
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 30.3 bits (65), Expect = 0.36
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 2/73 (2%)
Frame = -3
Query: 816 VIDFMATWCGPCKMIGPKLDEIAAEMXXXXXXXXXXXXXXXXIA--SEYNINSMPTFVFV 643
++ F A WCG CK + P ++A+ + A S+Y + PT V
Sbjct: 52 LVVFYAPWCGYCKKLVPTYQKLASNLHSLLPVTAVDCDADQNRAVCSQYQVQGFPTIKLV 111
Query: 642 KNGKKLDEFSGAN 604
K S +
Sbjct: 112 YPSSKGSSLSSTD 124
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 29.5 bits (63), Expect = 0.62
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = -3
Query: 792 CGPCKMIGPKLD---EIAAEMXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKNGKKLD 622
CG CK +GP D E A E ++S NI ++PT +NG+ ++
Sbjct: 54 CGACKRLGPMWDNMVEKAKEQVEGSNFHFGEVDCSKELSSCANIRAVPTLYLYQNGEIVE 113
Query: 621 E 619
E
Sbjct: 114 E 114
>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 708
Score = 28.7 bits (61), Expect = 1.1
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = +2
Query: 32 SCKIHSNHPGLSSLYADLKRISTALKKHASTCIT*KKKHCDTCYLQKFLKARWKLILH 205
SC + N PG SL+ + + L+K A K K D Y Q+ L + + H
Sbjct: 548 SCNLRENQPGSLSLFLQIDALELLLRKTAL-----KLKLTDAVYQQEMLNVVQRCVSH 600
>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 554
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 401 IFCIPEAANTKKLISSNSLQTLKTFFIYIL 490
++C+P + +LI SNS Q +F+ Y L
Sbjct: 308 LYCLPPSNVMYELIKSNSQQPFVSFYAYAL 337
>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1029
Score = 26.6 bits (56), Expect = 4.4
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +2
Query: 407 CIPEAANTK--KLISSNSLQTLKTFFIYILKTY 499
CI TK KL+SSN+LQ + F+ ++K +
Sbjct: 401 CISSTFITKAFKLVSSNTLQAMSHFYATMIKLF 433
>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 26.6 bits (56), Expect = 4.4
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 480 IKNVFNVCNEFEDINFFVFAASGMQKILVLL 388
+KN + EFE I F+ + AS +Q+I L+
Sbjct: 397 LKNKVHTIKEFEKIVFYFYEASDLQQIRSLV 427
>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 599
Score = 26.2 bits (55), Expect = 5.8
Identities = 18/69 (26%), Positives = 35/69 (50%)
Frame = +2
Query: 365 LFIELFDYNRTNIFCIPEAANTKKLISSNSLQTLKTFFIYILKTYTCFFFKFHLSFHRRL 544
L LF Y +N+ ++ + + + NSL +K+F +LKT+ C + +F + + +L
Sbjct: 317 LLYTLFSYLDSNL----KSTSRDRYLVYNSL--IKSFVNTVLKTFRCRYTQFLIFWASQL 370
Query: 545 RTTLVSIYL 571
I+L
Sbjct: 371 DPEFTDIFL 379
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 25.8 bits (54), Expect = 7.6
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +2
Query: 446 SNSLQTLKTFFIYILKTYTCFFFKFHLSFHRRLRTTLVSIYLCLRIVVLSLSTL 607
S SL ++ F + +L + CF L+ LR SIYL R+ + +S L
Sbjct: 710 SPSLHSILRFLLLLL-AFLCFAMHILLTPEATLRKWASSIYLSFRLECVFISFL 762
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,868,148
Number of Sequences: 5004
Number of extensions: 51779
Number of successful extensions: 137
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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