Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_A09
         (365 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    26   1.6  
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    24   6.4  
SPBC582.09 |pex11||peroxisomal biogenesis factor 11|Schizosaccha...    24   6.4  
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch...    24   8.5  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    24   8.5  
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch...    24   8.5  

>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = +2

Query: 5   IIFGSKNNNTGNLFSFRFT----PCRLSFTLGSSGLITT 109
           ++F  +NN+T  +F+F        C L+F L +SG   T
Sbjct: 336 VVFQKQNNHTNTIFTFDVPQVSGSCELNFHLDTSGFPIT 374


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +1

Query: 103 HHIGTLXTFYCLHRSSRNCMLQEHPDQYQQDLSLL 207
           HH+  L       R+   C LQEH +   Q L  L
Sbjct: 395 HHVELLMALVVCSRNYMRCNLQEHHNAIVQALQNL 429


>SPBC582.09 |pex11||peroxisomal biogenesis factor
           11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 238

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 262 IFSKPQPFIYACRPYFKSIKLLNIFS 339
           +FS  +   Y C+ YF S+KL N  S
Sbjct: 67  LFSIGKVLDYICKVYFDSLKLQNPLS 92


>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = +2

Query: 5   IIFGSKNNNTGNLFSFRFT----PCRLSFTLGSSGLITT 109
           ++F  +NN+T  +F+F        C L+  L +SG   T
Sbjct: 256 VVFQKQNNHTNTIFTFDVPQVSGSCELNLHLDTSGFPIT 294


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = -1

Query: 302 GLQAYINGCGFEKIAWTANSTGMERDP*NFCLNRL 198
           GL +++N   +  I W  N+TG++ +     +N++
Sbjct: 273 GLDSFLNFPLYWPITWAFNNTGLQCEALAIAINQI 307


>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = +2

Query: 5   IIFGSKNNNTGNLFSFRFT----PCRLSFTLGSSGLITT 109
           ++F  +NN+T  +F+F        C L+  L +SG   T
Sbjct: 256 VVFQKQNNHTNTIFTFDVPQVSGSCELNLHLDTSGFPIT 294


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,318,817
Number of Sequences: 5004
Number of extensions: 22485
Number of successful extensions: 56
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)