Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_A09
         (365 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0593 + 4379263-4379377,4380359-4380491,4380585-4380656,438...    31   0.28 
02_02_0676 + 12851218-12851604,12851756-12851800                       29   1.5  
01_01_0237 - 1972699-1972796,1973618-1974334,1975387-1976191           28   2.6  
09_02_0510 + 10076279-10076580,10076696-10076830,10077254-10077902     27   4.5  
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989...    27   4.5  
08_02_0222 + 14446967-14448310                                         27   6.0  
04_03_0911 + 20767041-20767047,20767119-20769322                       27   6.0  

>03_01_0593 +
           4379263-4379377,4380359-4380491,4380585-4380656,
           4380739-4380813,4380896-4380967,4381055-4381126,
           4381251-4381322,4381403-4381468,4381547-4381612,
           4381689-4381978,4382072-4382355,4382690-4382961,
           4383411-4383546,4383840-4383970,4384078-4384234,
           4384334-4384477
          Length = 718

 Score = 31.1 bits (67), Expect = 0.28
 Identities = 15/65 (23%), Positives = 30/65 (46%)
 Frame = +1

Query: 109 IGTLXTFYCLHRSSRNCMLQEHPDQYQQDLSLLRQKFQGSRSIPVELAVQAIFSKPQPFI 288
           +G +  F+ + R  R   L+EH +Q+Q   S    + +  + I     +  + S P P  
Sbjct: 307 VGAVVAFFVIRRRKRRAALEEHFEQHQPFTSFPSNEVKDMKPIEESTTID-VESLPSPAS 365

Query: 289 YACRP 303
           ++ +P
Sbjct: 366 FSLKP 370


>02_02_0676 + 12851218-12851604,12851756-12851800
          Length = 143

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 127 RXQGYLCGDEAGRPKSEAXTTRSKPETKEIACVVVLR 17
           R  G +  DE GRP       R++ + K  A ++VLR
Sbjct: 104 RFSGMILYDERGRPVCSGVRDRARDKEKHAAAIMVLR 140


>01_01_0237 - 1972699-1972796,1973618-1974334,1975387-1976191
          Length = 539

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = -2

Query: 160 YNYVKNDGDNRRXQGY--LCGDEAGRP 86
           ++YV  DGD+R   GY  LC D  G P
Sbjct: 163 HSYVFRDGDDRTPYGYAALCQDVVGMP 189


>09_02_0510 + 10076279-10076580,10076696-10076830,10077254-10077902
          Length = 361

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +1

Query: 127 FYCLHRSSRNCMLQEHPDQYQQDLSLLRQKFQGSRSIPVELAVQAIFSKPQ 279
           + C HR S+ CM  +   +  +D ++    + G  +  V  AV A   KP+
Sbjct: 149 YRCTHRHSQGCMATKQVQRTDEDATVFDVIYHGEHTC-VHKAVAAGAGKPE 198


>01_06_0124 - 26692731-26697046,26698749-26698827,26698899-26698955,
            26699321-26699416
          Length = 1515

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +1

Query: 79   HSWVVRPHHHIGTLXTFYCLHRSSRNCMLQEHPDQYQQDLSLLRQKFQ 222
            H+ ++  H H+G   T      +  N  LQ H  + +  L L RQK +
Sbjct: 1277 HTEIMEKHRHLGEENT----SANKENRKLQNHVQELEAQLQLARQKLR 1320


>08_02_0222 + 14446967-14448310
          Length = 447

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +1

Query: 130 YCLHRSSRNCMLQEHPDQYQQDLSLLRQKFQG--SRSIPVELAVQAIFSKPQP 282
           YC H   ++C+L   P+Q+ Q+L     + QG      P++   QA+F   +P
Sbjct: 303 YCHHDDQQDCVL---PEQHSQELHGYNNEEQGYLLPPEPIDQEEQALFVGGEP 352


>04_03_0911 + 20767041-20767047,20767119-20769322
          Length = 736

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +1

Query: 22  EQQHRQSL*FQVYSLSSXLHSWVVRPHHHIGTLXTFYCLHRSSRNCML 165
           E   + SL   ++  S  + SW +R    +G       LH S R+C++
Sbjct: 511 EHMPKSSLDAHLFPSSGAVLSWTIRYQIALGVARGLAYLHSSCRDCII 558


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,281,601
Number of Sequences: 37544
Number of extensions: 140006
Number of successful extensions: 331
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)