Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_A09
         (365 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   2.6  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   2.6  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    20   8.0  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    20   8.0  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    20   8.0  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    20   8.0  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 297 TSIYKWLRLRENRLDS 250
           T I+ WL L  NRLD+
Sbjct: 541 TWIHPWLPLLRNRLDT 556


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 106 HIGTLXTFYCLHRSSRNCML 165
           H   L  FY +H S +N +L
Sbjct: 96  HFTALGNFYFVHESLKNVLL 115


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 151 VKNDGDNRRXQGYLCGDEAGRP 86
           VKN       +GY+ GD   +P
Sbjct: 312 VKNISVKELRRGYVAGDSKNQP 333


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 151 VKNDGDNRRXQGYLCGDEAGRP 86
           VKN       +GY+ GD   +P
Sbjct: 23  VKNISVKELRRGYVAGDSKNQP 44


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 169 EHPDQYQQDLSLLRQKFQGSRSI 237
           EHP Q+QQ      Q  Q ++S+
Sbjct: 19  EHPHQHQQHYGAAVQVPQQTQSV 41


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = -2

Query: 151 VKNDGDNRRXQGYLCGDEAGRPKSEA 74
           VKN       +GY+ GD    P   A
Sbjct: 312 VKNVSVKELRRGYVAGDSKNNPPKGA 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,791
Number of Sequences: 438
Number of extensions: 1587
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8680350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)