Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_A08
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078157-18|AAG24080.1|  338|Caenorhabditis elegans Seven tm rec...    28   5.4  
AF016447-2|AAG24012.1|  339|Caenorhabditis elegans Hypothetical ...    28   5.4  
U64840-4|AAB04962.1|  316|Caenorhabditis elegans Serpentine rece...    28   7.1  

>AF078157-18|AAG24080.1|  338|Caenorhabditis elegans Seven tm
           receptor protein 28 protein.
          Length = 338

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 376 IYKKTAKCICYHSPTCVIYLFRMF 305
           IY+  A CIC+H P+   Y+   F
Sbjct: 250 IYQLAAPCICFHIPSFFFYIAPFF 273


>AF016447-2|AAG24012.1|  339|Caenorhabditis elegans Hypothetical
           protein C54F6.9 protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -1

Query: 416 IAKLNLIEMSLFLDL*ENSEMHLLSLSYMCYLFIQNVLCS--RNFK 285
           +A  N+IE     D  EN E     L + C  F  NVLC   R FK
Sbjct: 150 LAVFNVIEYFSTFDFIENLEYSDKKLLFQCNTFNANVLCGAMRGFK 195


>U64840-4|AAB04962.1|  316|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 68 protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = -3

Query: 105 IMCAINASXLMFKTNLSTIIMNYICIFF 22
           ++ AIN + ++F ++L T+ + YI +FF
Sbjct: 262 VIIAINQTLMVFSSDLMTLSLPYILLFF 289


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,952,926
Number of Sequences: 27780
Number of extensions: 232283
Number of successful extensions: 484
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)