Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_A04
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    29   0.60 
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   1.4  
SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   1.8  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    27   2.4  
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   7.4  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    25   7.4  

>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 537 YYPQQPENPIFSPTQATXLADP 472
           YYPQQP  P+F  ++ T L DP
Sbjct: 522 YYPQQPL-PLFDSSEMTELVDP 542


>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +3

Query: 168 TCAVCVGNCGRASGTTCGPTSPSEEHWE 251
           TCA+C+  C +     C   S  E  +E
Sbjct: 83  TCAICIRQCHKCESNVCSMCSKQERTFE 110


>SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 17/62 (27%), Positives = 25/62 (40%)
 Frame = -1

Query: 286 TSHHPECPHPRSSQCSSDGEVGPQVVPEARPQLPTHTAQVEEASPQATPPLTVDPDRMKN 107
           +S   E    R  Q SS             P  PT    + ++SP+A   L+ +  R+KN
Sbjct: 80  SSSEDERKPARHPQSSSQKPFASSTYNVELPTSPTKITNIGQSSPRALRYLSPESQRIKN 139

Query: 106 CK 101
            K
Sbjct: 140 AK 141


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 191 LRSGLRDHLRXYLPIRRTLGRTRMWALWVVRS 286
           LR+  +  L  +LP RRT G  ++WA + V +
Sbjct: 838 LRNFKQGSLVLFLPTRRTAGNKKVWAAFNVNA 869


>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 17/68 (25%), Positives = 25/68 (36%)
 Frame = +3

Query: 24  FLQKNYNNNXFYTKQLIVSIXI*V*GLQFFIRSGSTVSGGVACGDASSTCAVCVGNCGRA 203
           F   NY    F   + +V+    + G  F+  S ST          + TC       G+ 
Sbjct: 345 FTVGNYPEGYFLPVRFVVANGAYIGGFDFYFTSDSTGPLATTSYSYTKTCTQQFLPFGQG 404

Query: 204 SGTTCGPT 227
           +G   GPT
Sbjct: 405 NGGVNGPT 412


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 17/68 (25%), Positives = 25/68 (36%)
 Frame = +3

Query: 24  FLQKNYNNNXFYTKQLIVSIXI*V*GLQFFIRSGSTVSGGVACGDASSTCAVCVGNCGRA 203
           F   NY    F   + +V+    + G  F+  S ST          + TC       G+ 
Sbjct: 345 FTVGNYPEGYFLPVRFVVANGAYIGGFDFYFTSDSTGPLATTSYSYTKTCTQQFLPFGQG 404

Query: 204 SGTTCGPT 227
           +G   GPT
Sbjct: 405 NGGVNGPT 412


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,777,399
Number of Sequences: 5004
Number of extensions: 29290
Number of successful extensions: 85
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)