Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_A04
         (553 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    31   0.42 
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    31   0.42 
AL032625-4|CAB63350.2|  792|Caenorhabditis elegans Hypothetical ...    31   0.73 
Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical pr...    28   3.9  
U38937-1|AAA93079.1|  441|Caenorhabditis elegans LIN-1 protein.        27   6.8  
U38935-1|AAB60254.1|  441|Caenorhabditis elegans LIN-1 protein.        27   6.8  
AF067606-1|AAC17530.3|  441|Caenorhabditis elegans Abnormal cell...    27   6.8  
AC084159-10|AAK39362.1|  310|Caenorhabditis elegans Hypothetical...    27   6.8  
AC006696-8|AAF39989.1|  120|Caenorhabditis elegans Hypothetical ...    27   6.8  
Z68753-3|CAA92988.3|  984|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 265 PHPRSSQCSSDG-EVGPQVVPEARPQLPTHTAQVEEASPQATP 140
           P P ++  SS G   G +  PEA P  P+      EA+P+A P
Sbjct: 456 PAPEAAPASSGGYSGGSEAAPEAAPAAPSGGYSGSEAAPEAAP 498



 Score = 29.1 bits (62), Expect = 2.2
 Identities = 17/52 (32%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
 Frame = +3

Query: 123 GSTVSGGVACGDASSTCAVCVGNCGRASGTTC-GPTSPSEEHWEERGCGHSG 275
           G    GG  CG     C    G CG   G  C G +S         GCG  G
Sbjct: 108 GGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGG 159



 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 238 SDGEVGPQVVPEARPQLPTHTAQVEEASPQATP 140
           S G  G +  PEA P  P+      EA+P+A P
Sbjct: 484 SGGYSGSEAAPEAAPAAPSGGYSGSEAAPEAAP 516



 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 238 SDGEVGPQVVPEARPQLPTHTAQVEEASPQATP 140
           S G  G +  PEA P  P+      EA+P+A P
Sbjct: 502 SGGYSGSEAAPEAAPAAPSGGYSGSEAAPEAAP 534



 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 238 SDGEVGPQVVPEARPQLPTHTAQVEEASPQATP 140
           S G  G +  PEA P  P+      EA+P+A P
Sbjct: 520 SGGYSGSEAAPEAAPAAPSGGYSGSEAAPEAAP 552



 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 238 SDGEVGPQVVPEARPQLPTHTAQVEEASPQATP 140
           S G  G +  PEA P  P+      EA+P+A P
Sbjct: 538 SGGYSGSEAAPEAAPAAPSGGYSGSEAAPEAAP 570


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 265 PHPRSSQCSSDG-EVGPQVVPEARPQLPTHTAQVEEASPQATP 140
           P P ++  SS G   G +  PEA P  P+      EA+P+A P
Sbjct: 456 PAPEAAPASSGGYSGGSEAAPEAAPAAPSGGYSGSEAAPEAAP 498



 Score = 29.1 bits (62), Expect = 2.2
 Identities = 17/52 (32%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
 Frame = +3

Query: 123 GSTVSGGVACGDASSTCAVCVGNCGRASGTTC-GPTSPSEEHWEERGCGHSG 275
           G    GG  CG     C    G CG   G  C G +S         GCG  G
Sbjct: 108 GGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGG 159



 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 238 SDGEVGPQVVPEARPQLPTHTAQVEEASPQATP 140
           S G  G +  PEA P  P+      EA+P+A P
Sbjct: 484 SGGYSGSEAAPEAAPAAPSGGYSGSEAAPEAAP 516



 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 238 SDGEVGPQVVPEARPQLPTHTAQVEEASPQATP 140
           S G  G +  PEA P  P+      EA+P+A P
Sbjct: 502 SGGYSGSEAAPEAAPAAPSGGYSGSEAAPEAAP 534



 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 238 SDGEVGPQVVPEARPQLPTHTAQVEEASPQATP 140
           S G  G +  PEA P  P+      EA+P+A P
Sbjct: 520 SGGYSGSEAAPEAAPAAPSGGYSGSEAAPEAAP 552



 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 238 SDGEVGPQVVPEARPQLPTHTAQVEEASPQATP 140
           S G  G +  PEA P  P+      EA+P+A P
Sbjct: 538 SGGYSGSEAAPEAAPAAPSGGYSGSEAAPEAAP 570


>AL032625-4|CAB63350.2|  792|Caenorhabditis elegans Hypothetical
           protein Y37H9A.3 protein.
          Length = 792

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -1

Query: 283 SHHPECPHPRSSQCSSDGEVGPQVVPEARPQLPTHTAQVEEASPQATPP 137
           +HHP  P P   Q +   E  P  +P+ +   P  TA    A+ + T P
Sbjct: 215 AHHP--PAPPIRQAAHAAESSPPPIPQRKSSAPAPTAAAPPATKEPTDP 261


>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 16/51 (31%), Positives = 16/51 (31%)
 Frame = +3

Query: 123 GSTVSGGVACGDASSTCAVCVGNCGRASGTTCGPTSPSEEHWEERGCGHSG 275
           G    GG  CG     C    G CG   G   G   P        GCG  G
Sbjct: 76  GGGCGGGGGCGGGGGGCGGGGGGCGGGGGCGGGCAPPPPPPACGGGCGGGG 126



 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +3

Query: 123 GSTVSGGVACGDASSTCAVCVGNCGRASGTTCG 221
           G    GG  CG     C    G CG   G  CG
Sbjct: 147 GGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCG 179


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
            protein Y40C5A.3 protein.
          Length = 2344

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +3

Query: 123  GSTVSGGVACGDASSTCAVCVGNCGRASGTTCGPTSPSEEH 245
            G    GG +CG   ++   C G  G  S + C P + +  H
Sbjct: 2136 GGCSGGGNSCGGGCNSGGSCGGGGGGCSSSCCQPQTSATSH 2176


>Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical
           protein C27H6.1 protein.
          Length = 1657

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -1

Query: 265 PHPRSSQCSSDGEVGPQVVPEARPQLP-THTAQVEEASPQATPPLTVDP 122
           P P +S  SS G   P   P ARP+ P      V+ A+P   PP    P
Sbjct: 673 PTPEAS--SSTGTSAPARPPPARPEAPKKDETAVDAAAPPRPPPAARPP 719


>U38937-1|AAA93079.1|  441|Caenorhabditis elegans LIN-1 protein.
          Length = 441

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 19/69 (27%), Positives = 23/69 (33%), Gaps = 6/69 (8%)
 Frame = -1

Query: 286 TSHHPECPHPRSSQCSSDGEVGPQVVPE-ARPQLPTHTAQVEEASPQAT-----PPLTVD 125
           T+H    P P  S CS    V     P  + P   +   +    SP  T     PP    
Sbjct: 216 TTHSVSTPSPTDSVCSPSSSVASSATPSTSSPVDESRQCRKRSLSPSTTSSTTAPPPPPQ 275

Query: 124 PDRMKNCKP 98
           P   K  KP
Sbjct: 276 PPTKKGMKP 284


>U38935-1|AAB60254.1|  441|Caenorhabditis elegans LIN-1 protein.
          Length = 441

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 19/69 (27%), Positives = 23/69 (33%), Gaps = 6/69 (8%)
 Frame = -1

Query: 286 TSHHPECPHPRSSQCSSDGEVGPQVVPE-ARPQLPTHTAQVEEASPQAT-----PPLTVD 125
           T+H    P P  S CS    V     P  + P   +   +    SP  T     PP    
Sbjct: 216 TTHSVSTPSPTDSVCSPSSSVASSATPSTSSPVDESRQCRKRSLSPSTTSSTTAPPPPPQ 275

Query: 124 PDRMKNCKP 98
           P   K  KP
Sbjct: 276 PPTKKGMKP 284


>AF067606-1|AAC17530.3|  441|Caenorhabditis elegans Abnormal cell
           lineage protein 1 protein.
          Length = 441

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 19/69 (27%), Positives = 23/69 (33%), Gaps = 6/69 (8%)
 Frame = -1

Query: 286 TSHHPECPHPRSSQCSSDGEVGPQVVPE-ARPQLPTHTAQVEEASPQAT-----PPLTVD 125
           T+H    P P  S CS    V     P  + P   +   +    SP  T     PP    
Sbjct: 216 TTHSVSTPSPTDSVCSPSSSVASSATPSTSSPVDESRQCRKRSLSPSTTSSTTAPPPPPQ 275

Query: 124 PDRMKNCKP 98
           P   K  KP
Sbjct: 276 PPTKKGMKP 284


>AC084159-10|AAK39362.1|  310|Caenorhabditis elegans Hypothetical
           protein Y73B3A.5 protein.
          Length = 310

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 18/66 (27%), Positives = 22/66 (33%), Gaps = 3/66 (4%)
 Frame = -1

Query: 286 TSHHPECPHPRSSQCSSDGEVGPQVVPE-ARPQLPTHTAQVEEASPQATPPLTV--DPDR 116
           T+H    P P  S CS    V     P  + P   +   +    S   TP  T    P  
Sbjct: 121 TTHSVSTPSPTDSVCSPSSSVASSATPSTSSPVDESRQCRKRSLSSSTTPSTTAPPQPPT 180

Query: 115 MKNCKP 98
            K  KP
Sbjct: 181 KKGMKP 186


>AC006696-8|AAF39989.1|  120|Caenorhabditis elegans Hypothetical
           protein W08E12.2 protein.
          Length = 120

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
 Frame = +3

Query: 120 SGSTVSGGVACGDASSTCAVCVG-NCGRASGTTCGP 224
           S     GG   G     C  C G NCG  +G  CGP
Sbjct: 17  SAQCFGGGCGGGCFGGNCGGCSGNNCG-CNGNNCGP 51


>Z68753-3|CAA92988.3|  984|Caenorhabditis elegans Hypothetical
           protein ZC518.2 protein.
          Length = 984

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = -1

Query: 283 SHHPECPHPRSSQCSSDGEVGPQVVPEARPQ-LPTHTAQVEEASPQATPPLTVDPDRMKN 107
           SH P    P ++Q S +G   P     +RP   PT    V  A+P   PP+   P  + +
Sbjct: 103 SHQPPSFSP-ATQPSMNGHHAPPPPAVSRPPAFPTPPPSVGSAAPSIQPPI---PSALAS 158

Query: 106 CKP 98
            +P
Sbjct: 159 ARP 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,069,221
Number of Sequences: 27780
Number of extensions: 179200
Number of successful extensions: 732
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)