Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_A04
         (553 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    23   2.1  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   2.1  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   2.7  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   2.7  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   3.6  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   8.3  

>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 36  NYNNNXFYTKQLIVSI 83
           NYNNN  Y K+L  +I
Sbjct: 95  NYNNNNNYNKKLYYNI 110


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 36  NYNNNXFYTKQLIVSI 83
           NYNNN  Y K+L  +I
Sbjct: 333 NYNNNNNYNKKLYYNI 348


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
 Frame = +3

Query: 9   KYHPYFLQKNYNNNXF--YTKQL 71
           KY  Y    NYNNN +  Y K+L
Sbjct: 323 KYSNYNNYNNYNNNNYNNYNKKL 345


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 30  QKNYNNNXFYTK 65
           + NYN+N FY+K
Sbjct: 135 ENNYNDNYFYSK 146


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 273 GWCEVIFFLVFLKRPLRL 326
           GW  ++ +L+F   PLRL
Sbjct: 134 GWLLLMLYLLFATLPLRL 151


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 36  NYNNNXFYTKQLIVSI 83
           NYNN+  Y K+L  +I
Sbjct: 95  NYNNDNNYNKKLYYNI 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,672
Number of Sequences: 438
Number of extensions: 2396
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)