Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_A01
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   4.0  
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    25   7.0  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   7.0  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    25   9.2  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 565 TSNSRKVHYIVLTAKRKYIFHSAINKI 485
           TS SR +HY++  AKR+      I KI
Sbjct: 461 TSESRHLHYLMAKAKRENADSKTIRKI 487


>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 254 IMLRFSPKRSKVIIFEYESVV*FQNGKAKTNYYEIITK 367
           I+L+ SP+R + +I  +     F+    +T YYE +TK
Sbjct: 505 IVLKLSPERIQELIEIFIRATKFETLFWETPYYEYVTK 542


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 613 VLCRTVNYKCNKPLIFTSNSRKVHYIVLTAKRKYIFHSAI 494
           V+C++ N   N P      S  +HY      R++ FH A+
Sbjct: 535 VMCQSCNEITNTPEPIQDLSIPIHYPSSRVSRRHRFHRAL 574


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = +3

Query: 417 FKLTIIGILNNKNKHCY---FKNYSLILL 494
           F  T  G+L++  KHC    F+N+ L+ +
Sbjct: 641 FNATTFGLLSSFTKHCVWLKFRNFDLVFM 669


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,293,599
Number of Sequences: 5004
Number of extensions: 42455
Number of successful extensions: 78
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)