Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_P23
         (810 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr...    58   1e-09
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    27   2.4  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    26   7.3  
SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit Cdc1|S...    26   7.3  
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ...    25   9.6  

>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
           protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 455

 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
 Frame = +1

Query: 514 RHRCECQASKH---ELINNCLQCGRVVCRQEGSGPCLFCGSLVCTPEEQRELNAKTK-AS 681
           R  C CQ  KH   E   NCL CG+++C  EG GPC FC + V +  +Q EL  + K   
Sbjct: 192 RRVCNCQGRKHPLNEAAPNCLNCGKIICIVEGIGPCTFCDNPVISKAQQLELIQELKHEG 251

Query: 682 AKLMESLMEKSRPK 723
           ++L ++  +K + K
Sbjct: 252 SRLKQAANQKRKSK 265


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -2

Query: 269 SIKVFMYSVKSTSLSIDETYFIKSSGTSKSKIVDRFSLIHCSILI 135
           S+  + YS+K     I +TY+ +S G  K+ +V    LI  ++L+
Sbjct: 90  SLAAYPYSLKVLWSPIVDTYYCRSFGRRKTWVVPCMLLISSTLLL 134


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 326  GNFSLMNSEKKFLCSELLKSIKVFMYSVKSTSLSIDETYFIK 201
            GN SL N+E+K  C EL+  ++  M  ++  S  +     +K
Sbjct: 1290 GNVSL-NAEQKARCKELMYPVRKHMKRLRKDSSGLGRAELVK 1330


>SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit
           Cdc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 695 SLLWRRVDPRAGRTLWC 745
           +LLW  + P +  TLWC
Sbjct: 366 TLLWNHITPTSPDTLWC 382


>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
           subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 257 FMYSVKSTSLSIDETYFIKSSGTSKSK 177
           +++SV+ST +   +  FIKS    KSK
Sbjct: 308 YLFSVESTGIMKPDVLFIKSIAVLKSK 334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,174,944
Number of Sequences: 5004
Number of extensions: 64916
Number of successful extensions: 175
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)