Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_P23
(810 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2537| Best HMM Match : zf-C2HC5 (HMM E-Value=2.5e-28) 139 2e-33
SB_28925| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 33 0.21
SB_35564| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_13376| Best HMM Match : DUF1213 (HMM E-Value=0.18) 29 3.4
SB_12902| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_39040| Best HMM Match : ChaB (HMM E-Value=4.2) 29 5.9
SB_4149| Best HMM Match : VWA (HMM E-Value=0) 29 5.9
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 5.9
SB_40657| Best HMM Match : UVR (HMM E-Value=5.5) 28 7.8
>SB_2537| Best HMM Match : zf-C2HC5 (HMM E-Value=2.5e-28)
Length = 523
Score = 139 bits (337), Expect = 2e-33
Identities = 85/248 (34%), Positives = 125/248 (50%), Gaps = 24/248 (9%)
Frame = +1
Query: 139 KMEQWIRENLSTILDFEVPDDLIKYVSSIDNEVDLTEYMKTLIDFNNSEHKNFFSEFIRL 318
++ W + LS I D +++ Y+ +DN D+ EY+ + N + F + ++
Sbjct: 6 RLRMWCVDELSKITD--CGEEITDYILHMDNIEDVKEYLGGFLGQENPKQIEFLNILVQ- 62
Query: 319 KFPXXXXXXXXXXXXXXXXXVQQEVIVKETVPTQSEP-------ESXXXXXXXYVNLYSQ 477
V++E + KET PT+ E +V LYS+
Sbjct: 63 -----RLNEINPEFERAGTWVRKEKLEKETSPTKGNSKADKKIVEQEKKKSTKFVPLYSK 117
Query: 478 EGKNAQVVMLKGRHRCECQASKHELINNCLQCGRVVCRQEGSGPCLFCGSLVCTPEEQRE 657
EG+ V L GRH CEC KH L+NNC CGR+VC QEG+GPC FCG+LVC+ EQ
Sbjct: 118 EGEARSSVRLPGRHPCECLGQKHGLVNNCTSCGRIVCDQEGAGPCYFCGALVCSRAEQEI 177
Query: 658 LNAKTKASAKLMESLME-------KSRPK----------GWEDALVHXNRLLEYDRTSER 786
+ ++K SAKL++ LM KS+ + G + A+ H N+LLEYD+TS
Sbjct: 178 IARESKKSAKLLKQLMSQEFSEEVKSQGRMGTSNGKDLQGLDKAIAHKNKLLEYDKTSVC 237
Query: 787 RTRVXDDD 810
RT+V DD+
Sbjct: 238 RTKVIDDE 245
>SB_28925| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 792
Score = 33.5 bits (73), Expect = 0.21
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Frame = +1
Query: 469 YSQEGKNAQVVMLKGRHRCECQASKHELINNCLQCGRVVCR-QEGSGPCLFC 621
Y Q M RHRC C A + ++ C C R + G+ C+ C
Sbjct: 115 YCQSNGEWSPAMYTSRHRCMCHAGYQDTVSACTACPRGTYKPSAGNATCVAC 166
>SB_35564| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1028
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 127 LSSIKMEQWIRENLSTILDFEVPDDLIKYVSSIDNEVDLTE 249
L +KM WI L +++ +D+ K +SS D + LTE
Sbjct: 169 LLEVKMNSWIEGKLHSLVTTVATEDVTKLISSDDFQESLTE 209
>SB_13376| Best HMM Match : DUF1213 (HMM E-Value=0.18)
Length = 1022
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +1
Query: 562 CLQCGRVVCRQEGSGPCLFCGSLVC 636
CL CGRV C CL CG + C
Sbjct: 791 CLACGRVSCVLVRLDACLTCGRVSC 815
>SB_12902| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1585
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -2
Query: 308 NSEKKFLCSELLKSIKVFMYSVKSTSLSIDE 216
+S++ SE KS++VF+Y + TSL DE
Sbjct: 17 SSQETLWLSEFYKSLQVFIYDKQRTSLRCDE 47
>SB_39040| Best HMM Match : ChaB (HMM E-Value=4.2)
Length = 401
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/47 (25%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +1
Query: 613 LFCGSLVCTPEEQRELNAKTKASAKLMESLM--EKSRPKGWEDALVH 747
++C TPEE+ + + ++ + + M S + +++RP+GW+ +H
Sbjct: 206 VYCREKDLTPEERGDHSPQSHSPVQTMASTITVDETRPRGWKRTPLH 252
>SB_4149| Best HMM Match : VWA (HMM E-Value=0)
Length = 1141
Score = 28.7 bits (61), Expect = 5.9
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Frame = -2
Query: 734 SSQPLGRLFSIRDSINLALALV-LAFNSLCSSGVQTKLPQ-------NRQGPEPSCLQTT 579
+SQP F D+ + ++L N++C + K P P+PS +T
Sbjct: 621 ASQPTSSFFVTADTYSGLISLAPKVVNTICRGSIYGKCPPPPPLPPGGTCPPQPSVNCST 680
Query: 578 RPHCKQLLISSCFEA*HSQRC 516
+C+ ++ C+++ S RC
Sbjct: 681 DENCQSQDVACCYDSCGSSRC 701
>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 4303
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 601 SGPCLFCGSLVCTPE--EQRELNAKTKASAKL 690
S C CG + CTPE + E N K + S+KL
Sbjct: 4255 SKTCELCGKMFCTPEYVAKHEDNEKLRRSSKL 4286
>SB_40657| Best HMM Match : UVR (HMM E-Value=5.5)
Length = 184
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +1
Query: 187 EVPDDLIKYVSSIDNEVDLTEYMKTLIDFNNSEHKNFFSEFIRLKF 324
++P+DL ++ D E + KT + + N+E +NF S F R F
Sbjct: 77 DLPEDLDVCIAQRDFEKAMELIDKTFVVWANTELQNFVSRFTRQVF 122
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,371,770
Number of Sequences: 59808
Number of extensions: 480487
Number of successful extensions: 2781
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2779
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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