Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_P23
(810 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC012448-1|AAH12448.1| 581|Homo sapiens thyroid hormone recepto... 133 6e-31
L40371-1|AAC41738.1| 286|Homo sapiens thyroid receptor interact... 130 6e-30
AF168418-1|AAF01278.1| 581|Homo sapiens activating signal coint... 129 1e-29
BC020651-1|AAH20651.1| 170|Homo sapiens mitochondrial ribosomal... 31 6.5
AL589653-1|CAI40809.1| 1560|Homo sapiens proprotein convertase s... 31 6.5
AL391868-1|CAI40675.1| 1560|Homo sapiens proprotein convertase s... 31 6.5
AL353607-3|CAI41234.1| 1560|Homo sapiens proprotein convertase s... 31 6.5
>BC012448-1|AAH12448.1| 581|Homo sapiens thyroid hormone receptor
interactor 4 protein.
Length = 581
Score = 133 bits (322), Expect = 6e-31
Identities = 69/138 (50%), Positives = 90/138 (65%), Gaps = 20/138 (14%)
Frame = +1
Query: 457 YVNLYSQEGKNAQVVMLKGRHRCECQASKHELINNCLQCGRVVCRQEGSGPCLFCGSLVC 636
+VNLY++EG++ V+L GRH C+C KH+LINNCL CGR+VC QEGSGPCLFCG+LVC
Sbjct: 149 FVNLYTREGQDRLAVLLPGRHPCDCLGQKHKLINNCLICGRIVCEQEGSGPCLFCGTLVC 208
Query: 637 TPEEQRELNAKTKASAKLMESLM-------------------EKSRPK-GWEDALVHXNR 756
T EEQ L + S KL++ LM ++ R K G E A+ H ++
Sbjct: 209 THEEQDILQRDSNKSQKLLKKLMSGVENSGKVDISTKDLLPHQELRIKSGLEKAIKHKDK 268
Query: 757 LLEYDRTSERRTRVXDDD 810
LLE+DRTS RRT+V DD+
Sbjct: 269 LLEFDRTSIRRTQVIDDE 286
Score = 36.7 bits (81), Expect = 0.099
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +1
Query: 127 LSSIKMEQWIRENLSTILDFEVPDDLIKYVSSIDNEVDLTEYMKTLIDFNNSEHKNFFSE 306
+S + W + L +V +++I+YV SI++ ++ EY+ L+ N + F E
Sbjct: 7 VSGEPLVHWCTQQLRKTFGLDVSEEIIQYVLSIESAEEIREYVTDLLQGNEGKKGQFIEE 66
Query: 307 FI 312
I
Sbjct: 67 LI 68
>L40371-1|AAC41738.1| 286|Homo sapiens thyroid receptor interactor
protein.
Length = 286
Score = 130 bits (314), Expect = 6e-30
Identities = 68/138 (49%), Positives = 89/138 (64%), Gaps = 20/138 (14%)
Frame = +1
Query: 457 YVNLYSQEGKNAQVVMLKGRHRCECQASKHELINNCLQCGRVVCRQEGSGPCLFCGSLVC 636
+VNLY++E ++ V+L GRH C+C KH+LINNCL CGR+VC QEGSGPCLFCG+LVC
Sbjct: 25 FVNLYTRERQDRLAVLLPGRHPCDCLGQKHKLINNCLICGRIVCEQEGSGPCLFCGTLVC 84
Query: 637 TPEEQRELNAKTKASAKLMESLM-------------------EKSRPK-GWEDALVHXNR 756
T EEQ L + S KL++ LM ++ R K G E A+ H ++
Sbjct: 85 THEEQDILQRDSNKSQKLLKKLMSGVENSGKVDISTKDLLPHQELRIKSGLEKAIKHKDK 144
Query: 757 LLEYDRTSERRTRVXDDD 810
LLE+DRTS RRT+V DD+
Sbjct: 145 LLEFDRTSIRRTQVIDDE 162
>AF168418-1|AAF01278.1| 581|Homo sapiens activating signal
cointegrator 1 protein.
Length = 581
Score = 129 bits (311), Expect = 1e-29
Identities = 68/138 (49%), Positives = 88/138 (63%), Gaps = 20/138 (14%)
Frame = +1
Query: 457 YVNLYSQEGKNAQVVMLKGRHRCECQASKHELINNCLQCGRVVCRQEGSGPCLFCGSLVC 636
+VNLY++E ++ V L GRH C+C KH+LINNCL CGR+VC QEGSGPCLFCG+LVC
Sbjct: 149 FVNLYTRERQDRLAVALPGRHPCDCLGQKHKLINNCLICGRIVCEQEGSGPCLFCGTLVC 208
Query: 637 TPEEQRELNAKTKASAKLMESLM-------------------EKSRPK-GWEDALVHXNR 756
T EEQ L + S KL++ LM ++ R K G E A+ H ++
Sbjct: 209 THEEQDILQRDSNKSQKLLKKLMSGVENSGKVDISTKDLLPHQELRIKSGLEKAIKHKDK 268
Query: 757 LLEYDRTSERRTRVXDDD 810
LLE+DRTS RRT+V DD+
Sbjct: 269 LLEFDRTSIRRTQVIDDE 286
Score = 36.7 bits (81), Expect = 0.099
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +1
Query: 127 LSSIKMEQWIRENLSTILDFEVPDDLIKYVSSIDNEVDLTEYMKTLIDFNNSEHKNFFSE 306
+S + W + L +V +++I+YV SI++ ++ EY+ L+ N + F E
Sbjct: 7 VSGEPLVHWCTQQLRKTFGLDVSEEIIQYVLSIESAEEIREYVTDLLQGNEGKKGQFIEE 66
Query: 307 FI 312
I
Sbjct: 67 LI 68
>BC020651-1|AAH20651.1| 170|Homo sapiens mitochondrial ribosomal
protein L35 protein.
Length = 170
Score = 30.7 bits (66), Expect = 6.5
Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Frame = -2
Query: 356 FCCLDVPPLIGNFSLMNSEKKFLC---SELLKSIKVFMYSVKSTSLSIDETYFIKSSGTS 186
F + P + L SE+ C S +L + + SV + TYF G
Sbjct: 46 FSHIQTPVVSSTPRLTTSERNLTCGHTSVILNRMAPVLPSVLKLPVR-SLTYFSARKGKR 104
Query: 185 KS--KIVDRFSLIHCSILIEDRYYSNAKMWR 99
K+ ++DRF +HC + + + K+W+
Sbjct: 105 KTVKAVIDRFLRLHCGLWVRRKAGYKKKLWK 135
>AL589653-1|CAI40809.1| 1560|Homo sapiens proprotein convertase
subtilisin/kexin type 5 protein.
Length = 1560
Score = 30.7 bits (66), Expect = 6.5
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = +1
Query: 511 GRHRCECQASKHELINNCLQCGRVVCRQEGSGP--CLFCGS 627
GR C + K E N C C R +GSGP C CG+
Sbjct: 588 GRCVSNCPSWKFEFENQCHPCHHTCQRCQGSGPTHCTSCGA 628
>AL391868-1|CAI40675.1| 1560|Homo sapiens proprotein convertase
subtilisin/kexin type 5 protein.
Length = 1560
Score = 30.7 bits (66), Expect = 6.5
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = +1
Query: 511 GRHRCECQASKHELINNCLQCGRVVCRQEGSGP--CLFCGS 627
GR C + K E N C C R +GSGP C CG+
Sbjct: 588 GRCVSNCPSWKFEFENQCHPCHHTCQRCQGSGPTHCTSCGA 628
>AL353607-3|CAI41234.1| 1560|Homo sapiens proprotein convertase
subtilisin/kexin type 5 protein.
Length = 1560
Score = 30.7 bits (66), Expect = 6.5
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = +1
Query: 511 GRHRCECQASKHELINNCLQCGRVVCRQEGSGP--CLFCGS 627
GR C + K E N C C R +GSGP C CG+
Sbjct: 588 GRCVSNCPSWKFEFENQCHPCHHTCQRCQGSGPTHCTSCGA 628
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,278,007
Number of Sequences: 237096
Number of extensions: 2399484
Number of successful extensions: 5816
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5806
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10036353240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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