Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_P22
(610 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 423 e-119
SB_56| Best HMM Match : Actin (HMM E-Value=0) 423 e-119
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 423 e-119
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 422 e-118
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 349 8e-97
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 224 5e-59
SB_54| Best HMM Match : Actin (HMM E-Value=0) 186 9e-48
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 180 6e-46
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 162 2e-40
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 157 7e-39
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 105 2e-23
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 59 2e-09
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 59 3e-09
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 58 4e-09
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 58 6e-09
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 56 2e-08
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 40 0.002
SB_25667| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.10
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.73
SB_13911| Best HMM Match : PAN (HMM E-Value=0.033) 31 0.97
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_54914| Best HMM Match : Patched (HMM E-Value=1.3e-09) 30 1.7
SB_8780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 30 1.7
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_49803| Best HMM Match : S-antigen (HMM E-Value=3.5) 29 2.9
SB_43551| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.027) 29 2.9
SB_55729| Best HMM Match : YajC (HMM E-Value=0.56) 29 3.9
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_28336| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_41430| Best HMM Match : SSXT (HMM E-Value=7.6) 28 6.8
SB_31099| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_10273| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_50904| Best HMM Match : NACHT (HMM E-Value=2.3e-05) 27 9.0
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 423 bits (1042), Expect = e-119
Identities = 197/201 (98%), Positives = 200/201 (99%)
Frame = +3
Query: 3 DXVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 182
D VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR
Sbjct: 3 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 62
Query: 183 GILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 362
GILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI
Sbjct: 63 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 122
Query: 363 MFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 542
MFETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAG
Sbjct: 123 MFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAG 182
Query: 543 RDLTDYLMKILTERGYSFTTT 605
RDLTDYLMKILTERGYSFTTT
Sbjct: 183 RDLTDYLMKILTERGYSFTTT 203
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 423 bits (1042), Expect = e-119
Identities = 197/201 (98%), Positives = 200/201 (99%)
Frame = +3
Query: 3 DXVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 182
D VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR
Sbjct: 3 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 62
Query: 183 GILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 362
GILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI
Sbjct: 63 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 122
Query: 363 MFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 542
MFETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAG
Sbjct: 123 MFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAG 182
Query: 543 RDLTDYLMKILTERGYSFTTT 605
RDLTDYLMKILTERGYSFTTT
Sbjct: 183 RDLTDYLMKILTERGYSFTTT 203
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 423 bits (1042), Expect = e-119
Identities = 197/201 (98%), Positives = 200/201 (99%)
Frame = +3
Query: 3 DXVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 182
D VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR
Sbjct: 4 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 63
Query: 183 GILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 362
GILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI
Sbjct: 64 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 123
Query: 363 MFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 542
MFETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAG
Sbjct: 124 MFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAG 183
Query: 543 RDLTDYLMKILTERGYSFTTT 605
RDLTDYLMKILTERGYSFTTT
Sbjct: 184 RDLTDYLMKILTERGYSFTTT 204
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 422 bits (1039), Expect = e-118
Identities = 195/201 (97%), Positives = 200/201 (99%)
Frame = +3
Query: 3 DXVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 182
D +AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR
Sbjct: 4 DEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 63
Query: 183 GILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 362
GILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI
Sbjct: 64 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 123
Query: 363 MFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 542
MFETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAI+RLDLAG
Sbjct: 124 MFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIIRLDLAG 183
Query: 543 RDLTDYLMKILTERGYSFTTT 605
RDLTDYLMKILTERGYSFTTT
Sbjct: 184 RDLTDYLMKILTERGYSFTTT 204
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 349 bits (859), Expect = 8e-97
Identities = 162/170 (95%), Positives = 167/170 (98%), Gaps = 2/170 (1%)
Frame = +3
Query: 3 DXVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 182
D +AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR
Sbjct: 4 DDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 63
Query: 183 GILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 362
GILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI
Sbjct: 64 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 123
Query: 363 MFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYE--GYA 506
MFETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGVSHTVPIYE GY+
Sbjct: 124 MFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEERGYS 173
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 224 bits (547), Expect = 5e-59
Identities = 102/201 (50%), Positives = 141/201 (70%), Gaps = 3/201 (1%)
Frame = +3
Query: 12 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRG 185
+ +V DNG+G K G+AG + P +FPS+VGRP R + + KD VGDEA R
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLRY 66
Query: 186 ILTLKYPIEHGIITNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANREKMTQI 362
+L + YP+++GI+ NWDDM+ +W +TF +++ + P VLLTE PLNP NREKM ++
Sbjct: 67 MLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREKMIEV 126
Query: 363 MFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 542
MFE + +Y+AIQAVL+LYA G TG+V+DSGDGV+H P+YEG+ALPH RLD+AG
Sbjct: 127 MFENYQFEGVYIAIQAVLTLYAQGLLTGVVIDSGDGVTHICPVYEGFALPHLTRRLDIAG 186
Query: 543 RDLTDYLMKILTERGYSFTTT 605
RD+T YL+K++ RGY+F T
Sbjct: 187 RDITKYLIKLMLLRGYAFNHT 207
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 186 bits (454), Expect = 9e-48
Identities = 84/120 (70%), Positives = 101/120 (84%)
Frame = +3
Query: 246 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLY 425
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P MYVA+QAV++LY
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALY 2188
Query: 426 ASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTT 605
ASGRTTG V D GDGVSHTVP+Y+GY LPHA R+DLAGRDLT YL +++TERGYSF +T
Sbjct: 2189 ASGRTTGTVFDCGDGVSHTVPVYDGYWLPHATQRIDLAGRDLTHYLQRLVTERGYSFQST 2248
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +3
Query: 18 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 119
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 180 bits (439), Expect = 6e-46
Identities = 82/88 (93%), Positives = 84/88 (95%)
Frame = +3
Query: 3 DXVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 182
D VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR
Sbjct: 3 DDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 62
Query: 183 GILTLKYPIEHGIITNWDDMEKIWHHTF 266
GILTLKYPIEHGI+TNWDDMEKI TF
Sbjct: 63 GILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 172 bits (418), Expect = 2e-43
Identities = 81/89 (91%), Positives = 86/89 (96%)
Frame = +3
Query: 339 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 518
N + M +IMFETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHA
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHA 137
Query: 519 ILRLDLAGRDLTDYLMKILTERGYSFTTT 605
I+RLDLAGRDLTDYLMKILTERGYSFTTT
Sbjct: 138 IIRLDLAGRDLTDYLMKILTERGYSFTTT 166
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 162 bits (393), Expect = 2e-40
Identities = 75/82 (91%), Positives = 79/82 (96%)
Frame = +3
Query: 360 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA 539
IMFE FNSPA+YVAIQAVLSLYASGRTTG+V DSGDGVSH VPIYEGYALPHAILRLDLA
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRTTGVVFDSGDGVSHNVPIYEGYALPHAILRLDLA 60
Query: 540 GRDLTDYLMKILTERGYSFTTT 605
GRDLTDYLMK++TERGYSFTTT
Sbjct: 61 GRDLTDYLMKLMTERGYSFTTT 82
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 157 bits (381), Expect = 7e-39
Identities = 66/101 (65%), Positives = 89/101 (88%)
Frame = +3
Query: 294 EHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 473
+HPVLLTEAPLNP+ NREK ++ FETFN PA+++++QAVLSLYA+GRTTG+VLD+GDGV
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDAGDGV 185
Query: 474 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 596
SH+VPIYEG+A+PH+I+R D+AGRD++ YL +L + G+ F
Sbjct: 186 SHSVPIYEGFAMPHSIMRTDIAGRDVSRYLRLLLRKEGHCF 226
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 105 bits (253), Expect = 2e-23
Identities = 48/126 (38%), Positives = 80/126 (63%)
Frame = +3
Query: 204 PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNS 383
PI+ G+I +WD EKI + + ++ HP+L++EA N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 384 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYL 563
PA ++ +VL+ +A+GR+ G+V+DSG + VP+++GY L AI+R LAG +T
Sbjct: 63 PAFFLCKNSVLTAFANGRSNGLVIDSGATQTSAVPVHDGYVLQQAIVRSPLAGDFITAQC 122
Query: 564 MKILTE 581
++ E
Sbjct: 123 RQMFEE 128
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.3 bits (137), Expect = 2e-09
Identities = 26/34 (76%), Positives = 28/34 (82%)
Frame = +3
Query: 18 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 119
LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1359 LVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 58.8 bits (136), Expect = 3e-09
Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 8/70 (11%)
Frame = +3
Query: 399 AIQAVLSLYASG-------RT-TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 554
A +AVL+L AS RT TG V+DSGDGV+H +P+ EGY + I + +AGRD+T
Sbjct: 40 ATKAVLALAASWTSRQVGERTLTGCVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDIT 99
Query: 555 DYLMKILTER 584
++ ++L ER
Sbjct: 100 FFVQQLLRER 109
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 58.4 bits (135), Expect = 4e-09
Identities = 47/181 (25%), Positives = 83/181 (45%), Gaps = 8/181 (4%)
Frame = +3
Query: 9 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 188
+A LV+D G+ K GFA + APR++ P+ + + + + ++ ++GD+ + +
Sbjct: 233 MATLVLDCGACSQKIGFASNQAPRSI-PNAIFKAKSE-------RRKLFIGDQIEECKDY 284
Query: 189 LTLKY--PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 362
L Y P + G + NWD ++IW +TF E + M +I
Sbjct: 285 SALFYVLPFQKGFLVNWDVEKQIWDYTFGKE--------------------GLEDAMDEI 324
Query: 363 MFETFNSPAMYVAIQAVLSLY------ASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIL 524
+FE +N A+ A LS Y S +V+D+G +H VP++ G + A+
Sbjct: 325 LFEEYNFKALSRTTAAQLSAYKCHQDMVSKNPVCLVVDTGYSFTHIVPVFNGKVIKKAVR 384
Query: 525 R 527
R
Sbjct: 385 R 385
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 58.0 bits (134), Expect = 6e-09
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Frame = +3
Query: 405 QAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL-TE 581
Q LSLYASG T G+ L SG + IYEG+ L H + L++ G LT+ L + L +
Sbjct: 767 QLSLSLYASGMTLGVCLSSGFSCTQAAVIYEGHTLNHTLQTLEIGGHHLTENLKQYLRDQ 826
Query: 582 RGYSFTTT 605
RG++FT++
Sbjct: 827 RGHNFTSS 834
Score = 55.2 bits (127), Expect = 4e-08
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Frame = +3
Query: 15 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKD-SYVGDEAQSKRG 185
A+V+DNG G+ K GFAGD PR + P++VG P+ +++G + KD GD A +K G
Sbjct: 702 AIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIGDNVNVKDYKKYGDAAVAKSG 761
Query: 186 ILTL 197
++ L
Sbjct: 762 VMHL 765
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 56.0 bits (129), Expect = 2e-08
Identities = 25/60 (41%), Positives = 34/60 (56%)
Frame = +3
Query: 132 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLL 311
G+ D ++GDEA K T K+PI H I+ +WD ME+ W + LR PE+H LL
Sbjct: 278 GVEDLDFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
Score = 32.3 bits (70), Expect = 0.32
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +3
Query: 441 TGIVLDSGDGVSHTVPI 491
TG V+DSGDGV+H +P+
Sbjct: 356 TGCVIDSGDGVTHVIPV 372
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/31 (61%), Positives = 26/31 (83%)
Frame = -3
Query: 116 VARATHDGREDGAGRVVAGETGLAHAGAIVD 24
+AR+ DG E+G+G +V+GETGLAH GAI+D
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIID 31
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/68 (29%), Positives = 38/68 (55%)
Frame = +3
Query: 249 IWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYA 428
I H F + L+V P +H V++T +E++ +I+ F A+Y+ Q++L++Y+
Sbjct: 513 ILEHAFLS-LKVDPVKHKVIMTIPQNTGLQEKEELVEILLGYFRVQAVYLQEQSILAMYS 571
Query: 429 SGRTTGIV 452
+GIV
Sbjct: 572 YSAVSGIV 579
>SB_25667| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 33.9 bits (74), Expect = 0.10
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +1
Query: 1 PTMLLRL*STMAPACARPVSPATTRPAPSSRPSWVALATRA*WSVWARKTPTWVTRP 171
P + + S P+ R TT+P P +PSWV + + W TW RP
Sbjct: 28 PELRMNTGSPSKPSDTRIADTTTTKPFPGYQPSWVKVK----YGAWYLNPKTWKARP 80
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 31.1 bits (67), Expect = 0.73
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 195 LKYPIEHGIITNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANRE 347
L+ P + ++T+++ E++ H F + P HPV++TE NP R+
Sbjct: 131 LRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNPNYCRQ 183
>SB_13911| Best HMM Match : PAN (HMM E-Value=0.033)
Length = 534
Score = 30.7 bits (66), Expect = 0.97
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +3
Query: 336 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV 452
A +E++ +I+ F A+Y+ Q++L++Y+ +GIV
Sbjct: 420 AKKEELVEILLGYFRVQAVYLQEQSILAMYSYSAVSGIV 458
>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1870
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -3
Query: 581 LGEDLHEVVGQVATSQVQTEDGVGQSVTFVDGYGVGDTISGVEHDTGG 438
L E + +V Q + GV S G+G G TISG D+GG
Sbjct: 1474 LQEAMMPIVSQQTCAAAMRRWGVVTSRMICGGFGAGSTISGCFGDSGG 1521
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 121 PWWRGRPTMDGKTARGASSPAKPALHMPEPLSTTSAA 11
P W + G T R PAKP+L++P P S T ++
Sbjct: 530 PKWLQQVKDGGNTNRRTRIPAKPSLNLPSPPSKTPSS 566
>SB_54914| Best HMM Match : Patched (HMM E-Value=1.3e-09)
Length = 645
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = -3
Query: 356 GHLLPVGLGVEGGFGEQHGVLLGGDTQLIVEGVVPDLLHVIPVGDDTVLDGVLQSEDTSL 177
G +L V LG+ GFG V G + + GV+P L+ I + D ++ + +D SL
Sbjct: 157 GGILAVALGILAGFGLAMAV---GTPFISLAGVLPFLILGIGIDDMFIIINEMDRQDNSL 213
Query: 176 AL 171
++
Sbjct: 214 SV 215
>SB_8780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/73 (21%), Positives = 30/73 (41%)
Frame = -1
Query: 541 PAKSRRRMAWGRA*PS*MGTVWETPSPESSTIPVVRPEAYSESTAWMATYMAGELKVSNM 362
P+ + +W P T W +PSP+ T P ++T+W + +S++
Sbjct: 93 PSPQYKTTSWSLPLPQHKTTSWSSPSPKYKTTSWTSPSPQYKTTSWSSPLPQQTTFLSSL 152
Query: 361 IWVIFSLLALGLR 323
+I L + R
Sbjct: 153 YHIIGRLSGVHYR 165
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 115 WRGRPTMDGKTARGASSPAKPALHMPEPLSTTSAA 11
W + G T R PAKPAL++P P S T ++
Sbjct: 72 WLQQVKDGGNTNRRTRIPAKPALNLPSPPSKTPSS 106
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 91 GKTARGASSPAKPALHMPEPLSTTSAA 11
G T R PAKPAL++P P S T ++
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKTPSS 106
>SB_49803| Best HMM Match : S-antigen (HMM E-Value=3.5)
Length = 257
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = -3
Query: 572 DLHEVVGQVATSQVQTEDGVGQSVTFVDGYGV----GDTISGVEHDTGGTTGGVQ 420
D H++ + +TS V+ + G + D + T S E +T GTTGG Q
Sbjct: 149 DKHQITNKASTSSVEKANTAGTTGGTQDQHATQGNKASTCSFEEANTAGTTGGTQ 203
>SB_43551| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.027)
Length = 466
Score = 29.1 bits (62), Expect = 2.9
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 9/115 (7%)
Frame = -1
Query: 481 VWE--TPSPESSTIPVVRPE-------AYSESTAWMATYMAGELKVSNMIWVIFSLLALG 329
VWE T P + T+P + + Y S +W+ L N ++++F +LG
Sbjct: 3 VWELSTTGPTNRTVPTIIIDYAICTEVLYKTSGSWIRICDI-VLLAPNAMFMVFLFYSLG 61
Query: 328 LRGASVSSTGCSSGATRSSL*KVWCQIFSMSSQLVMIPCSMGYFRVRIPLLLWAS 164
L A + T C T +L ++ ++++SQ+ + C + R +LL AS
Sbjct: 62 LAHAKLVGTRCPIVKTIYTLLLLYGIHYTLNSQVFAV-CVVSVARCFASMLLTAS 115
>SB_55729| Best HMM Match : YajC (HMM E-Value=0.56)
Length = 654
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -3
Query: 524 EDGVGQSVTFVDGYGVGDTISGVEHDTGGTTGG 426
+DG G VDG GVGD G + D G GG
Sbjct: 9 DDGDGGGDDGVDGGGVGDDGDGDDSDCGDDGGG 41
>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1974
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +3
Query: 339 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 488
NR + +++ E S ++ + +L+LY RT D+ + HT P
Sbjct: 437 NRVEFVKLLLENGVSMGQFLTPERLLALYRGVRTCNATPDNNNRACHTTP 486
>SB_28336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +3
Query: 324 LNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV 452
+ PK ++ ++F F P M +A++ + A+G TGI+
Sbjct: 174 ITPKRATSQIIFVLFCIFGLPVMMLALKTAGDIIAAGLKTGII 216
>SB_41430| Best HMM Match : SSXT (HMM E-Value=7.6)
Length = 188
Score = 27.9 bits (59), Expect = 6.8
Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Frame = -1
Query: 490 MGTVWETPSPESSTIPVVRPEAYSESTAWMATYMAGELK-VSNMIWVIFSLLALGLRGAS 314
M + + PSP P+A+ + A Y +G LK S V + L+ G G
Sbjct: 1 MAELADLPSPRMDWSSTDLPQAFKKFRATCELYFSGPLKEKSEPDKVSYLLIWTGDEGIE 60
Query: 313 VSSTGCSSGATRSSL*KVW 257
+SST S L W
Sbjct: 61 LSSTWALSADDSKKLDTYW 79
>SB_31099| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 319
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = -1
Query: 415 STAWMATYMAGELKVSNMIWV---IFSLLALGL 326
S AW+ + + EL+ S +WV IFS+L +G+
Sbjct: 163 SVAWLCSLLYLELEASLYVWVPSLIFSILIIGV 195
>SB_10273| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 739
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +1
Query: 4 TMLLRL*STM-APACARPVSPATTRPAPSSR 93
T+L+R T+ APA +P+SPAT P +R
Sbjct: 637 TLLVRPLETIPAPAPTKPISPATPASGPPTR 667
>SB_50904| Best HMM Match : NACHT (HMM E-Value=2.3e-05)
Length = 1122
Score = 27.5 bits (58), Expect = 9.0
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -3
Query: 599 GERVTPLGEDLHEVVGQVATSQVQTEDGVGQSVTFVDGYGVGDTISGVEHDTGG 438
G+RV +GE L + V V Q GV Q V V G +G + GV+ G
Sbjct: 585 GQRVQGVGEQLGQRVQGVGEQLRQQVQGVDQRVQGV-GEQLGQQVQGVDQRVQG 637
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,404,856
Number of Sequences: 59808
Number of extensions: 399709
Number of successful extensions: 1536
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 1315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1531
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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