Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_P17
         (829 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    29   1.1  
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    27   2.5  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    27   4.3  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    27   4.3  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    26   5.7  
SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   5.7  

>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 223  FLNRFSIMLVFWWEDLSFCICYPFFKIF 140
            FL RFS+     W +L   + Y FF IF
Sbjct: 1476 FLERFSMRYTHRWRNLGIFVGYVFFNIF 1503


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 152 EWVTNTKRQIFPPENQHDREAIQKLIQDMRKKQM 253
           +++   + ++FP   Q D E I +L  DMR++ +
Sbjct: 729 KYIHFAREKVFPRLQQMDEEKISRLYSDMRRESL 762


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 87  WLCTHHFLLDCSFFSTNQNILKNG*QIQKDKSSHQKTNMIEKRF 218
           WLCT    L C+  S   +I+      +  KSS  KTN++   F
Sbjct: 348 WLCTFFHALQCAIIS---SIVSQWFFYRDTKSSATKTNLVSHFF 388


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 298 NYIIYKLGSLGFQTLHLFLPHILY*FLNRFSIMLVF 191
           N +I   G  G +T   ++ H+L+  LNR ++ L++
Sbjct: 536 NLLILCKGFEGLETFFAYIVHLLHGVLNRNNVKLIY 571


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1112

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 197  QHDREAIQKLIQDMRKKQMQSLESK*TKF 283
            Q   E +  +IQDM KKQ    +S  T+F
Sbjct: 960  QRTNEVLLPVIQDMHKKQFVGTQSNLTQF 988


>SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 625 WKSFMNNFSLKCLFCDIA 678
           WKSF+++ ++ C F D+A
Sbjct: 119 WKSFIHDVNMACSFSDVA 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,303,463
Number of Sequences: 5004
Number of extensions: 67311
Number of successful extensions: 189
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)