Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_P17
         (829 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5981| Best HMM Match : No HMM Matches (HMM E-Value=.)               50   2e-06
SB_47663| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_41501| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_33077| Best HMM Match : R3H (HMM E-Value=0.38)                      29   6.1  
SB_2892| Best HMM Match : RasGAP_C (HMM E-Value=0.83)                  29   6.1  
SB_54257| Best HMM Match : Cache (HMM E-Value=4.4e-09)                 28   8.0  

>SB_5981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 88

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 19/44 (43%), Positives = 29/44 (65%)
 Frame = +2

Query: 62  HWKLXVGXXAMYTSFPVGLFFFFNQPKYFEEWVTNTKRQIFPPE 193
           H +      A+Y  FPV LF++FN P+ +E++V N K QI+PP+
Sbjct: 13  HMRQETSWIAVYVFFPVALFYYFNLPEIYEDYVNNKKGQIYPPD 56


>SB_47663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1409

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = -2

Query: 504  WAFISI*D-QVSDKLVDPSVKLPDESKLNKL 415
            ++F+S  D Q   KLV+P   LP++S+LNK+
Sbjct: 946  YSFLSACDKQTKVKLVEPFNNLPNDSRLNKI 976


>SB_41501| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 748

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +2

Query: 656 SVYFAILLKNY-IHNIIWWLFHINLLL 733
           ++YF  L + Y ++ +I WLF++ LLL
Sbjct: 528 NLYFLTLCRKYGVYTVIKWLFYVKLLL 554


>SB_33077| Best HMM Match : R3H (HMM E-Value=0.38)
          Length = 332

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 161 TNTKRQIFPPENQHDREAIQKLIQDMRKKQ 250
           +NT   + P EN+ D  +I++ + D+RK++
Sbjct: 285 SNTSYGVVPSENKRDLRSIEETLNDIRKRK 314


>SB_2892| Best HMM Match : RasGAP_C (HMM E-Value=0.83)
          Length = 333

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +2

Query: 146 FEEWVTNTKRQIFPPENQHDREAIQKLIQDMRKKQMQSLESK*TKFINNI 295
           FEE     K +IF  ENQ +   ++KL +D   +++++L  K  K  N +
Sbjct: 72  FEEREVELKEEIFELENQVETLKLEKLKRDREIERLEALLRKSAKENNRL 121


>SB_54257| Best HMM Match : Cache (HMM E-Value=4.4e-09)
          Length = 820

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 140 KYFEEWVTNTKRQIFPPENQHDREAIQKLIQDMRKK 247
           K   E   ++ R +  PE QHD EAI++   D+ ++
Sbjct: 620 KIAPEAFNDSARYVNTPETQHDVEAIERFFNDLSQQ 655


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,719,723
Number of Sequences: 59808
Number of extensions: 425439
Number of successful extensions: 777
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)