Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_P15
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    29   0.60 
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    28   1.0  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.0  
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S...    27   2.4  
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    25   7.4  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   7.4  
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe...    25   7.4  

>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
           Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 13/47 (27%), Positives = 17/47 (36%)
 Frame = +1

Query: 214 YGADGLEGRIGLPGVPGDWGERGDFGDKGERGTEGSYGRRGDEGPQG 354
           YG+    G  G     G +G    +G  G     G+YG     G  G
Sbjct: 58  YGSSNNYGNYGSSNNYGSYGASNTYGSNGSSNNYGNYGATNSNGDAG 104


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 19/86 (22%), Positives = 40/86 (46%)
 Frame = +2

Query: 293 TKENEEPKDLMADEETKDHRVCLG*KEYLDSQDWTAVVVLMEFKAFPVYKVHLVIEVFQD 472
           T+ +EEP+D  A +   DHR+  G      S+D+  ++  + F       +H   E + +
Sbjct: 181 TEVSEEPEDTRAIDVVLDHRLIEGHDGSTPSEDYEFLIKWVNFS-----HLHCTWEPYNN 235

Query: 473 LTEKKAFKAWQEKVELTQEVQKEIKE 550
           ++  +  K     ++    + +EI+E
Sbjct: 236 ISMIRGSKKVDNHIKQVILLDREIRE 261


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 26/69 (37%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
 Frame = +1

Query: 466 PGPYGEKGLQGLAGEG---GVNSRGAKGDQGDGGXPXSYGLPXPQGWRGDSGLPGDEGDQ 636
           PGP G  G  G  GEG   G +     G  G  G P  +G   P G+ G  GL G  G  
Sbjct: 202 PGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFG-GGPGGFGG--GLGGFGG-- 256

Query: 637 XPMGLKGEP 663
            P G  G P
Sbjct: 257 GPGGFGGGP 265


>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
           Vps33|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +2

Query: 227 DLKEELVYPVCRETGENAAISGTKENEEPKDLMADEET 340
           D++++ +Y +CR T ENA +  T   +  +D++  E T
Sbjct: 63  DIEKKTIY-LCRPTYENAKLVATHVRQFQRDMLRIEST 99


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 214 YGADGLEGRIGLP-GVPGDWGERGDFG 291
           YG +GL G+ G P G PG+    G FG
Sbjct: 71  YGEEGLNGQPGGPGGGPGEGFPGGGFG 97


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 246 TNSSFKSICSVVPLKAWDARRAYASLISFYSTTITQS 136
           ++S F S  SV+P     +  ++ S  S Y+TT+T S
Sbjct: 290 SSSPFYSNSSVIPTSVPSSVSSFTSSSSSYTTTLTAS 326



 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 234 FKSICSVVPLKAWDARRAYASLISFYSTTITQSLIT 127
           F S  SV+P  A  +  ++ S  S Y+TT+T S  T
Sbjct: 456 FYSNSSVIPTSAPSSVSSFTSSNSSYTTTLTASNTT 491


>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 548

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = -1

Query: 457 YHQVDLVYRERLELHQYHYSRPILGIQILLLTQADPVVLRLLVGHKILRFLVLLC 293
           + ++D+ + +RL L   HY    LG+ ILL   ++  +LR     K +  L+  C
Sbjct: 103 WERMDMKFLDRLLLST-HYEYVDLGVSILLAFCSEEAILRSYEVKKRVSTLLQCC 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.148    0.486 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,376,357
Number of Sequences: 5004
Number of extensions: 46159
Number of successful extensions: 103
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)