Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_P13
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    31   0.27 
SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family protein|Schizosacchar...    28   1.9  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    26   7.6  

>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -1

Query: 570 VNTQYFATLDKATFTAAEFTRRSVAE 493
           +NTQYF+ LD  +  A EF RR  AE
Sbjct: 104 LNTQYFSQLDNDSVLAQEFQRRYYAE 129


>SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 244

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 723 VRHRLQCLRLEHSRFQFHKSFQHNLG 800
           VRH  Q L+L+   F F +S + NLG
Sbjct: 212 VRHIFQFLKLQEKGFHFGQSLRRNLG 237


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 651 YRILVKHILVYLMVILISYLVIMEVRHRL 737
           Y IL  HI+V ++ +L+S    MEV  RL
Sbjct: 549 YAILFIHIMVCILFLLLSTQRFMEVSARL 577


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,323,988
Number of Sequences: 5004
Number of extensions: 66355
Number of successful extensions: 145
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)