Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_P13
         (840 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022974-2|AAC48038.1|  344|Caenorhabditis elegans Seven tm rece...    29   4.1  
U53140-1|AAA96101.1|  276|Caenorhabditis elegans Hypothetical pr...    29   5.4  
Z66521-13|CAA91403.1|  444|Caenorhabditis elegans Hypothetical p...    28   9.5  

>AF022974-2|AAC48038.1|  344|Caenorhabditis elegans Seven tm
           receptor protein 209 protein.
          Length = 344

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 401 YCGVLGSFLVLIKQQSLKIYGAIYKNKTILNF 306
           YC   GSFLV+   Q +  Y A+  NK +  F
Sbjct: 96  YCAFFGSFLVIFSVQFIYRYWAVSGNKHLKEF 127


>U53140-1|AAA96101.1|  276|Caenorhabditis elegans Hypothetical
           protein ZC266.2 protein.
          Length = 276

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 225 SKFHNGCPSRPPRLHFVDSRNMTMPKYKV*NCLVFVNSSVNFKR 356
           S +  GCPS    L    S N+T+ K +  N  V ++SS ++ R
Sbjct: 125 SVYSEGCPSPDSSLKKFSSANVTISKSRTSNGEVTISSSSSYSR 168


>Z66521-13|CAA91403.1|  444|Caenorhabditis elegans Hypothetical
           protein W02B12.8a protein.
          Length = 444

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 587 PIPQVSVYGLPTGTRIENGKAVQDIGQTHTGILNGDPNIILGHHG 721
           PI  V  Y LP+   I++ + +Q + Q    I++ D  I+  H+G
Sbjct: 94  PIVVVYAYRLPSSKEIDHARLLQYLVQIIDKIVDQDYTIVYFHYG 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,619,168
Number of Sequences: 27780
Number of extensions: 389300
Number of successful extensions: 983
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)