Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_P13
         (840 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   1.1  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   4.6  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   8.1  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +2

Query: 620 TGTRIENGKAVQDIGQTHTGILNGDPNIILGH-HGGQAQVTVSAAGTQQIPVS 775
           TGTR+ +G   Q   Q   G+ NG    + GH   G+   T +   T   P S
Sbjct: 186 TGTRLLHGILSQHPQQHGLGVQNGYGRHLPGHAQMGRPSYTTATMATTSTPGS 238


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 733 LCLTSMMTKYDIRITIKYTSMCLTNILYC 647
           LC T++  + D  I IK   +C+   + C
Sbjct: 138 LCGTTLQNRLDEAILIKNERICILKSITC 166


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 418 LTTTSNIVVFWVHF*SLSNNNRLKFTEL 335
           + T    ++FW +  SL N+N   F+ L
Sbjct: 5   IITALGFLLFWQNSASLENDNEFGFSYL 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,589
Number of Sequences: 438
Number of extensions: 5033
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)