Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_P10
         (726 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    23   3.3  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   3.3  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   5.8  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    22   5.8  

>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +3

Query: 498 TGGKSIYGRTFSDENFKLKXTGPAILSMANAGPXTNG 608
           T G + YG TF   +      G  ++    +GP T G
Sbjct: 254 TIGLAFYGHTFQLADPAQHDLGAPVIDAGMSGPYTKG 290


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 314 SYIEINLFIRLSRSKTK 264
           S+ EIN F  +S SKTK
Sbjct: 60  SWTEINAFANVSPSKTK 76


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 88  VVIW*TNEAFVRFITSLCDK*KKLVSPWG 2
           V+IW +N +   +I    DK   +V  WG
Sbjct: 452 VIIWSSNLSKRPYIYKYLDKKNVVVQSWG 480


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 383 LSSFRYFIRVQFYDYTSXWLSVS 315
           LS +  FI V  YD    W SV+
Sbjct: 199 LSKYLDFINVMAYDLHGSWESVT 221


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,656
Number of Sequences: 336
Number of extensions: 3367
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)