Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_P09
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81048-2|CAB02840.1| 553|Caenorhabditis elegans Hypothetical pr... 82 4e-16
Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical pr... 33 0.20
Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical p... 33 0.20
U21854-1|AAA87454.1| 310|Caenorhabditis elegans cCAF1 protein p... 30 1.8
AL132860-28|CAB60501.1| 310|Caenorhabditis elegans Hypothetical... 30 1.8
AF101309-5|ABD94097.1| 543|Caenorhabditis elegans Hypothetical ... 29 2.4
AF101309-4|AAV58863.1| 669|Caenorhabditis elegans Hypothetical ... 29 2.4
AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical ... 29 2.4
U67956-5|AAB07694.1| 724|Caenorhabditis elegans Mechanosensory ... 29 3.2
U53180-1|AAK68285.1| 492|Caenorhabditis elegans Hypothetical pr... 29 3.2
L25312-1|AAA17404.1| 724|Caenorhabditis elegans mec-10 degeneri... 29 3.2
AF036700-4|AAV34787.1| 437|Caenorhabditis elegans Hypothetical ... 29 4.2
AF036700-3|AAB88366.2| 479|Caenorhabditis elegans Hypothetical ... 29 4.2
Z66495-4|CAA91271.1| 954|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical p... 28 7.4
Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical p... 28 7.4
Z49070-2|CAA88870.1| 341|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z48783-3|CAA88697.1| 341|Caenorhabditis elegans Hypothetical pr... 28 7.4
X52674-1|CAA36900.1| 341|Caenorhabditis elegans gpd-1 protein. 28 7.4
X52673-1|CAA36899.1| 341|Caenorhabditis elegans gpd-4 protein. 28 7.4
X15254-2|CAA33327.1| 341|Caenorhabditis elegans gpd-3 gene prod... 28 7.4
X15254-1|CAA33326.1| 341|Caenorhabditis elegans gpd-2 gene prod... 28 7.4
X04818-1|CAA28504.1| 341|Caenorhabditis elegans glyceraldehyde-... 28 7.4
U49941-6|AAB53874.1| 341|Caenorhabditis elegans Gpd (glyceralde... 28 7.4
U49941-5|AAB53869.1| 341|Caenorhabditis elegans Gpd (glyceralde... 28 7.4
U39997-9|AAA81101.2| 468|Caenorhabditis elegans Hypothetical pr... 27 9.8
>Z81048-2|CAB02840.1| 553|Caenorhabditis elegans Hypothetical
protein C41G7.3 protein.
Length = 553
Score = 81.8 bits (193), Expect = 4e-16
Identities = 49/140 (35%), Positives = 73/140 (52%), Gaps = 2/140 (1%)
Frame = +1
Query: 208 KDSSEKSWYDELKKPSWTPPKW-VFGPAWTVLYSSMGYASYLIWEECDGFT-EDAVLPLT 381
KD W+ LKKP+W P V+ + S +GYASYL+++ GF D L L
Sbjct: 414 KDQQVADWWAALKKPNWAPKDVRVYSAVDLLTLSPLGYASYLVYKNGGGFDYNDTKLALG 473
Query: 382 LYGVQLLLNWSWTPIFFGLKDFKLAFIEISVLSGAAVATTLSFGSVNKTAGLLLVPYLAW 561
LYG + L + PI K+ + +V+S A A + +F ++K AGLL+VP+ W
Sbjct: 474 LYGASVTLAVATIPIV-KKKELGCLWKNTTVVSLTAAAASFAFYKIDKKAGLLVVPFAVW 532
Query: 562 LGYASSLSYYIWKNNPKPVK 621
+ + L+Y I K N P+K
Sbjct: 533 TAFYAYLAYSIKKEN-DPIK 551
>Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical protein
C47E8.8 protein.
Length = 1675
Score = 33.1 bits (72), Expect = 0.20
Identities = 22/61 (36%), Positives = 29/61 (47%)
Frame = -3
Query: 515 LPNDSVVATAAPDSTEISMNASLKSFNPKKIGVQDQLSSSCTPYNVRGRTASSVKPSHSS 336
LP D V + D E++ S KS P++IG D SSS +VR R PS +
Sbjct: 878 LPEDPVSVQSRSDVCEVTAETSQKSVGPERIG-GDAQSSSENTVSVRNRVDLHGIPSKTP 936
Query: 335 Q 333
Q
Sbjct: 937 Q 937
>Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical
protein C47E8.8 protein.
Length = 1675
Score = 33.1 bits (72), Expect = 0.20
Identities = 22/61 (36%), Positives = 29/61 (47%)
Frame = -3
Query: 515 LPNDSVVATAAPDSTEISMNASLKSFNPKKIGVQDQLSSSCTPYNVRGRTASSVKPSHSS 336
LP D V + D E++ S KS P++IG D SSS +VR R PS +
Sbjct: 878 LPEDPVSVQSRSDVCEVTAETSQKSVGPERIG-GDAQSSSENTVSVRNRVDLHGIPSKTP 936
Query: 335 Q 333
Q
Sbjct: 937 Q 937
>U21854-1|AAA87454.1| 310|Caenorhabditis elegans cCAF1 protein
protein.
Length = 310
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Frame = +1
Query: 394 QLLLNWSWTPIFFGLKDFKL---AFIEISVLSGAAVATTLSFGSVNKTAGLLLVPYLAWL 564
Q N+S+ F + ++ A I+ ++L + T + FG + T+GL+ P + WL
Sbjct: 107 QFNFNFSFAEDMFSHESVEMLRQAGIDFTLLQNNGIPTAV-FGELLTTSGLITDPRITWL 165
Query: 565 GYASSLSY-YIWKN 603
++S + Y+ K+
Sbjct: 166 TFSSGYDFGYLLKS 179
>AL132860-28|CAB60501.1| 310|Caenorhabditis elegans Hypothetical
protein Y56A3A.20 protein.
Length = 310
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Frame = +1
Query: 394 QLLLNWSWTPIFFGLKDFKL---AFIEISVLSGAAVATTLSFGSVNKTAGLLLVPYLAWL 564
Q N+S+ F + ++ A I+ ++L + T + FG + T+GL+ P + WL
Sbjct: 107 QFNFNFSFAEDMFSHESVEMLRQAGIDFTLLQNNGIPTAV-FGELLTTSGLITDPRITWL 165
Query: 565 GYASSLSY-YIWKN 603
++S + Y+ K+
Sbjct: 166 TFSSGYDFGYLLKS 179
>AF101309-5|ABD94097.1| 543|Caenorhabditis elegans Hypothetical
protein H24G06.1e protein.
Length = 543
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/68 (25%), Positives = 29/68 (42%)
Frame = -3
Query: 530 AVLLTLPNDSVVATAAPDSTEISMNASLKSFNPKKIGVQDQLSSSCTPYNVRGRTASSVK 351
A L +P S + PD + + +S +P K + ++S TP + T SS+
Sbjct: 57 ATNLEVPPTSTNLSRRPDDLNFASSLRSRSQSPNKFALSQMINSRDTPSSPSSTTGSSIV 116
Query: 350 PSHSSQMR 327
+ Q R
Sbjct: 117 GRNLQQRR 124
>AF101309-4|AAV58863.1| 669|Caenorhabditis elegans Hypothetical
protein H24G06.1d protein.
Length = 669
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/68 (25%), Positives = 29/68 (42%)
Frame = -3
Query: 530 AVLLTLPNDSVVATAAPDSTEISMNASLKSFNPKKIGVQDQLSSSCTPYNVRGRTASSVK 351
A L +P S + PD + + +S +P K + ++S TP + T SS+
Sbjct: 183 ATNLEVPPTSTNLSRRPDDLNFASSLRSRSQSPNKFALSQMINSRDTPSSPSSTTGSSIV 242
Query: 350 PSHSSQMR 327
+ Q R
Sbjct: 243 GRNLQQRR 250
>AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical
protein H24G06.1b protein.
Length = 1601
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/68 (25%), Positives = 29/68 (42%)
Frame = -3
Query: 530 AVLLTLPNDSVVATAAPDSTEISMNASLKSFNPKKIGVQDQLSSSCTPYNVRGRTASSVK 351
A L +P S + PD + + +S +P K + ++S TP + T SS+
Sbjct: 1115 ATNLEVPPTSTNLSRRPDDLNFASSLRSRSQSPNKFALSQMINSRDTPSSPSSTTGSSIV 1174
Query: 350 PSHSSQMR 327
+ Q R
Sbjct: 1175 GRNLQQRR 1182
>U67956-5|AAB07694.1| 724|Caenorhabditis elegans Mechanosensory
abnormality protein10 protein.
Length = 724
Score = 29.1 bits (62), Expect = 3.2
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 214 CLCGFDRQKTIHWPIHQ 164
C+C FDRQ WP H+
Sbjct: 271 CICAFDRQTNDAWPCHR 287
>U53180-1|AAK68285.1| 492|Caenorhabditis elegans Hypothetical
protein D1014.7 protein.
Length = 492
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 428 SSD*RTSSWHSLRSQCCPGQQWQRHCHSAVSIRQPVCYSYHT 553
SS+ W+ +R+ P RH A+ I++P Y YHT
Sbjct: 70 SSNCPYKEWNQIRTDSIPNAN--RHADWAIQIKKPSKYLYHT 109
>L25312-1|AAA17404.1| 724|Caenorhabditis elegans mec-10 degenerin
protein.
Length = 724
Score = 29.1 bits (62), Expect = 3.2
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 214 CLCGFDRQKTIHWPIHQ 164
C+C FDRQ WP H+
Sbjct: 271 CICAFDRQTNDAWPCHR 287
>AF036700-4|AAV34787.1| 437|Caenorhabditis elegans Hypothetical
protein M04G7.3b protein.
Length = 437
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 464 SMNASLKSFNPKKIGVQDQLSSSCTPYN 381
S+N+S+K P KIG+ LS+ TP N
Sbjct: 401 SLNSSMKKSLPPKIGLPHPLSAEKTPLN 428
>AF036700-3|AAB88366.2| 479|Caenorhabditis elegans Hypothetical
protein M04G7.3a protein.
Length = 479
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 464 SMNASLKSFNPKKIGVQDQLSSSCTPYN 381
S+N+S+K P KIG+ LS+ TP N
Sbjct: 443 SLNSSMKKSLPPKIGLPHPLSAEKTPLN 470
>Z66495-4|CAA91271.1| 954|Caenorhabditis elegans Hypothetical
protein C36A4.5 protein.
Length = 954
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 682 IPLSGSGVKWLPEPIDTFIVPSPV 611
I GSG +PEP+D F P PV
Sbjct: 555 IVAGGSGEDRIPEPVDAFKKPDPV 578
>Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical
protein T05C12.10 protein.
Length = 1169
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 408 LVLDSYFLRIEGLQAGIH*DLSAVRGSSGNDTVIRQCQ 521
L+L +++ +E L H D V S GNDT+ CQ
Sbjct: 11 LLLSNFWPTVESLNYKCHNDQILVVQSFGNDTIRMHCQ 48
>Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical
protein T05C12.10 protein.
Length = 1169
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 408 LVLDSYFLRIEGLQAGIH*DLSAVRGSSGNDTVIRQCQ 521
L+L +++ +E L H D V S GNDT+ CQ
Sbjct: 11 LLLSNFWPTVESLNYKCHNDQILVVQSFGNDTIRMHCQ 48
>Z49070-2|CAA88870.1| 341|Caenorhabditis elegans Hypothetical
protein T09F3.3 protein.
Length = 341
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 237 IIPGLFTAVFADLTGKKQSIGPSTNIWKD 151
II GL T V A +K GPS +W+D
Sbjct: 176 IIEGLMTTVHAVTATQKTVDGPSGKLWRD 204
>Z48783-3|CAA88697.1| 341|Caenorhabditis elegans Hypothetical
protein F33H1.2 protein.
Length = 341
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 237 IIPGLFTAVFADLTGKKQSIGPSTNIWKD 151
II GL T V A +K GPS +W+D
Sbjct: 176 IIEGLMTTVHAVTATQKTVDGPSGKLWRD 204
>X52674-1|CAA36900.1| 341|Caenorhabditis elegans gpd-1 protein.
Length = 341
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 237 IIPGLFTAVFADLTGKKQSIGPSTNIWKD 151
II GL T V A +K GPS +W+D
Sbjct: 176 IIEGLMTTVHAVTATQKTVDGPSGKLWRD 204
>X52673-1|CAA36899.1| 341|Caenorhabditis elegans gpd-4 protein.
Length = 341
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 237 IIPGLFTAVFADLTGKKQSIGPSTNIWKD 151
II GL T V A +K GPS +W+D
Sbjct: 176 IIEGLMTTVHAVTATQKTVDGPSGKLWRD 204
>X15254-2|CAA33327.1| 341|Caenorhabditis elegans gpd-3 gene product
protein.
Length = 341
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 237 IIPGLFTAVFADLTGKKQSIGPSTNIWKD 151
II GL T V A +K GPS +W+D
Sbjct: 176 IIEGLMTTVHAVTATQKTVDGPSGKLWRD 204
>X15254-1|CAA33326.1| 341|Caenorhabditis elegans gpd-2 gene product
protein.
Length = 341
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 237 IIPGLFTAVFADLTGKKQSIGPSTNIWKD 151
II GL T V A +K GPS +W+D
Sbjct: 176 IIEGLMTTVHAVTATQKTVDGPSGKLWRD 204
>X04818-1|CAA28504.1| 341|Caenorhabditis elegans
glyceraldehyde-3-phosphate dehydrogenaseprotein.
Length = 341
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 237 IIPGLFTAVFADLTGKKQSIGPSTNIWKD 151
II GL T V A +K GPS +W+D
Sbjct: 176 IIEGLMTTVHAVTATQKTVDGPSGKLWRD 204
>U49941-6|AAB53874.1| 341|Caenorhabditis elegans Gpd
(glyceraldehyde 3-phosphatedehydrogenase) protein 2
protein.
Length = 341
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 237 IIPGLFTAVFADLTGKKQSIGPSTNIWKD 151
II GL T V A +K GPS +W+D
Sbjct: 176 IIEGLMTTVHAVTATQKTVDGPSGKLWRD 204
>U49941-5|AAB53869.1| 341|Caenorhabditis elegans Gpd
(glyceraldehyde 3-phosphatedehydrogenase) protein 3
protein.
Length = 341
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 237 IIPGLFTAVFADLTGKKQSIGPSTNIWKD 151
II GL T V A +K GPS +W+D
Sbjct: 176 IIEGLMTTVHAVTATQKTVDGPSGKLWRD 204
>U39997-9|AAA81101.2| 468|Caenorhabditis elegans Hypothetical
protein F56D1.1 protein.
Length = 468
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -1
Query: 304 CREQSKLDQIPTLGESSLASLIHHTRTFH-CCLCGFDRQKTIHWPIHQHLE 155
C E S + + T GE +HH++ H C C + +K I +H E
Sbjct: 108 CLECSTITKFGTYGELRAHHKLHHSKASHKCPQCSYTNEKPAF--IRRHFE 156
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,935,753
Number of Sequences: 27780
Number of extensions: 417197
Number of successful extensions: 1045
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -