Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_P08
         (811 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    41   2e-04
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    38   0.002
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    32   0.11 
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   7.3  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    25   9.6  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    25   9.6  
SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces ...    25   9.6  

>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
 Frame = +3

Query: 630 FKLISLYVGQAAFTFFYIHLLSQV--GEKVATQMKQDLFVSILRQDIEFFDKERTGELXN 803
           F L  +Y+    F   YI+ ++ +  GE++A +++QD   +IL Q+I +FD+   GE+  
Sbjct: 142 FCLYFIYIAIGVFGCSYIYTVTFIIAGERIARRIRQDYLHAILSQNIGYFDRLGAGEITT 201

Query: 804 RL 809
           R+
Sbjct: 202 RI 203



 Score = 33.9 bits (74), Expect = 0.027
 Identities = 23/98 (23%), Positives = 42/98 (42%)
 Frame = +3

Query: 486  LIAAVGSALAVAFLNVYIPAMLGVIVNVLAGIRNNPAADFIDEIKMPAFKLISLYVGQAA 665
            +I  +   LA        P    V    L    +  + DF+ ++ + A   + L + Q  
Sbjct: 792  IICLLIGILASMICGAAYPVQAAVFARFLNIFTDLSSTDFLHKVNVFAVYWLILAIVQFF 851

Query: 666  FTFFYIHLLSQVGEKVATQMKQDLFVSILRQDIEFFDK 779
                    ++   E V  +++  LF ++LRQD+EFFD+
Sbjct: 852  AYAISNFAMTYAMEAVLQRIRYHLFRTLLRQDVEFFDR 889


>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 2/139 (1%)
 Frame = +3

Query: 399 IQRRPNFQEDTAKFDWEKLLNYLKPHKWLLIAAVGSALAVAFLNVYIPAMLGVIVNVLAG 578
           I      Q    K +  +L    +   W    A    L  + + + IP ++G I++  AG
Sbjct: 129 INTNGTLQTPNKKVNVFRLFTLARGQGWNFFIAGSLLLVSSGVTMSIPYIVGKILD--AG 186

Query: 579 IRNNPAADFIDEIKMPAFK--LISLYVGQAAFTFFYIHLLSQVGEKVATQMKQDLFVSIL 752
              + +   I  I    F   L+ L+   +A  F  I  L  + E++ ++++  LF   +
Sbjct: 187 SSGDSSVTHIMGIPSGTFYIGLLGLFFLGSACNFGRIITLRLLSERIVSRLRARLFAKCM 246

Query: 753 RQDIEFFDKERTGELXNRL 809
             D  FFD  + G+L +RL
Sbjct: 247 SLDGAFFDFHKHGDLISRL 265


>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -1

Query: 379 ALQNTGLLYRKYRAPIAKLTPVHNFHGLQGNDSPDFELFPRVFNCDIYR 233
           +L+   L + KY A +AK  PV  FHGL G+   ++    + F+C + R
Sbjct: 2   SLKPVKLAFEKYSATVAKHPPVLIFHGLLGS-KRNWRSLAKKFSCKLDR 49


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 423 EDTAKFDWEKLLNYLKPHKWLLIAAVGSALAVAFLNVYIPA 545
           ED+ + +WE   + L P  W +   + + L  +F+ + I A
Sbjct: 83  EDSYQVEWESGKDPLAPKNWPMWKKIYTLLVASFIAIVITA 123


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 423 EDTAKFDWEKLLNYLKPHKWLLIAAVGSALAVA 521
           +D++ FD +   NYLK   WL  ++V S   VA
Sbjct: 286 DDSSSFD-DDYQNYLKQEPWLAHSSVNSLKDVA 317


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +3

Query: 135 NHLCCLTRQRFLASKSN--KYFTNIVKNKPS 221
           NH+CC    RFL+S+++  KY  ++   K S
Sbjct: 14  NHICCKQAGRFLSSQADLKKYSESLCLPKTS 44


>SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 661 QPLRFSTFTCCHKWEKKWPLK 723
           Q L F+TF  C  +  KWPL+
Sbjct: 86  QALAFTTFFQCLYYGSKWPLR 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,156,765
Number of Sequences: 5004
Number of extensions: 64798
Number of successful extensions: 189
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)