Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_P07
(824 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual 185 6e-48
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma... 32 0.086
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c... 30 0.35
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch... 30 0.46
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me... 29 0.61
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 28 1.4
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr... 28 1.8
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 27 3.2
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|... 27 4.3
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt... 26 7.5
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch... 26 7.5
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein... 26 7.5
SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr... 26 7.5
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p... 26 7.5
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 26 7.5
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S... 25 9.9
>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 304
Score = 185 bits (451), Expect = 6e-48
Identities = 95/243 (39%), Positives = 151/243 (62%), Gaps = 4/243 (1%)
Frame = +2
Query: 101 KDFVLEKILNNNTNRKTACVVGKFKDKSGVALILFEKNAFKENDLSEEGYFSKETQLKTF 280
K+F EKIL ++T K + GK +++ VAL+L EK AF N + + + K
Sbjct: 13 KEFKFEKILKDDTKSKIITLYGKIRNE--VALLLLEKTAFDLNTIKLDQLATFLQDTKLV 70
Query: 281 FENDIYGNFEC--FPP-STINGVKTTIIYPATDKHIAKFSQQEVHIVLETPELYKELTLP 451
ND++ F F ST+ VK+T+I+PA++ H+ K+S Q+ +V ETPE+Y ++T P
Sbjct: 71 ENNDVFHWFLSTNFQDCSTLPSVKSTLIWPASETHVRKYSSQKKRMVCETPEMYLKVTKP 130
Query: 452 HLEKEQF-NLQWVYNILEGKSEQDRIVHDNKSEKEGFVLLPDLKWDGLTKETLYLLAIVR 628
+E ++ +QWV NIL K+E +RIV ++ GF+++PDLKWD T L L+AIV
Sbjct: 131 FIETQRGPQIQWVENILTHKAEAERIVVEDPDPLNGFIVIPDLKWDRQTMSALNLMAIVH 190
Query: 629 QRDIKSLRDLDEQHLPLLKRIXDEGKKTILXKYQVPXSQLRIYLHYQPSFYHLHIHFTYL 808
DI S+RDL +H+PLL+ I ++ + ++ V +QL++++HY PS+YHLH+H ++
Sbjct: 191 ATDIASIRDLKYKHIPLLENIRNKVLTEVPKQFSVDKNQLKMFVHYLPSYYHLHVHILHV 250
Query: 809 XHE 817
HE
Sbjct: 251 DHE 253
>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 535
Score = 32.3 bits (70), Expect = 0.086
Identities = 18/66 (27%), Positives = 34/66 (51%)
Frame = +2
Query: 242 EGYFSKETQLKTFFENDIYGNFECFPPSTINGVKTTIIYPATDKHIAKFSQQEVHIVLET 421
+G S QL T ++ + ECF S+ N KTT++ + + F + +++ +
Sbjct: 225 DGALSAPGQLYTVTDSKARVHLECFGSSSSNN-KTTVLVEGGEVSVHPFKEWLLNLQHTS 283
Query: 422 PELYKE 439
P+LY+E
Sbjct: 284 PDLYEE 289
>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 30.3 bits (65), Expect = 0.35
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 290 DIYGNFECFPPSTINGVKTTIIYPATDKHIAKFS 391
D+Y ++ S INGV ++IYPA + I+K S
Sbjct: 34 DVYRSYISSELSKINGVDVSLIYPALETSISKDS 67
>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 29.9 bits (64), Expect = 0.46
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +2
Query: 107 FVLEKILNNNTNRKTACVVGKFKDKSGVALILFEKNAFKENDLSEEGYFSKETQLK 274
FVLE+ L N KT G+ K+GV L+ K + N S E ++ K +K
Sbjct: 433 FVLERHLKKNQAIKTGKSCGRINTKNGVELVYPRK--YVSNGFSAEHWYRKGRIIK 486
>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
membrane translocase Oxa102|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 29.5 bits (63), Expect = 0.61
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -3
Query: 225 SLKAFFSNRISATPLLSLNFPTTQAVFLLVLLFNIFS 115
S+K FF A+PL ++NFP A+F+ N+FS
Sbjct: 268 SMKKFFRFLCLASPLFTMNFP--MAIFMYWFPSNVFS 302
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 28.3 bits (60), Expect = 1.4
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Frame = +2
Query: 302 NFECFPPSTINGVKTTIIYPATDKHIAKFSQQEVHIVLETPELYKELTLPHLEKEQ--FN 475
N P ST++ V+ + AT++ F + ++ +VLE+ +YK+ + F
Sbjct: 208 NLATSPASTVSRVRALYDFAATEQGELSFKKGDIILVLES--VYKDWWKGSCKNAVGIFP 265
Query: 476 LQWVYNILEGKSEQDRIVHDNKSEKEGFVLLPDL 577
+ +V ++E EQ R E++ F LP +
Sbjct: 266 VNYVQRVVEPTIEQQR--QSAHMEQQVFDALPQI 297
>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 808
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +2
Query: 416 ETPELYKELTLPHLEKEQFNLQWVYNILEGKSEQDRIVHDNKSEK 550
+ P Y LTLP+L E+ LQ++ + +G+ D + + S+K
Sbjct: 253 DLPPAYSTLTLPNLPSEE-GLQFIQKVFKGEFMFDIVFNYASSKK 296
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 317 PPSTINGVKTTIIYPATDKHIAKFSQQEVHIVLETPELYKELTL-PHLEKEQFNL 478
PPS +N +T + + + + K++++++ + PE + L L P+ E + F +
Sbjct: 725 PPSQVNFSETLVNFSQPPRVLLKYNEKKLSLDSSAPENWISLCLQPYGESKDFEV 779
>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 595
Score = 26.6 bits (56), Expect = 4.3
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -3
Query: 243 SSLRSFSLKA-FFSNRISATPLLSLNFPTTQAVF 145
S L++++++ FFSN S+ L +FPT ++ F
Sbjct: 133 SKLQAYTMRTNFFSNGFSSNDLFPHSFPTWKSAF 166
>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 256 QRNSAENVFRERYLRKLRVFPAFDYKR 336
+R SA + R+R++RK+RV D +R
Sbjct: 156 ERRSAMDGLRDRHIRKVRVSQLLDLQR 182
>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 25.8 bits (54), Expect = 7.5
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -1
Query: 116 PKQSLSILTDCHLDCCRFHC 57
P LS+L D + CC ++C
Sbjct: 139 PNTLLSLLNDEEISCCEYYC 158
>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 758
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 343 FHTVYSRRRETLEVSVNIVLEKRFQLSFFGEI 248
FH + ++RET+ V+ N + + FFGEI
Sbjct: 704 FHQQWDKQRETISVAENDLRICQKARKFFGEI 735
>SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 251
Score = 25.8 bits (54), Expect = 7.5
Identities = 15/57 (26%), Positives = 23/57 (40%)
Frame = +2
Query: 617 AIVRQRDIKSLRDLDEQHLPLLKRIXDEGKKTILXKYQVPXSQLRIYLHYQPSFYHL 787
A++RQ D L+ P +++ GK+ L S L LH + Y L
Sbjct: 16 ALIRQEDTIIFNFLERAQFPRNEKVYKSGKEGCLNLENYDGSFLNYLLHEEEKVYAL 72
>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 718
Score = 25.8 bits (54), Expect = 7.5
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -3
Query: 717 KMVFFPSSXILFNNGKCCSSKSLRLFMSLCLTIANKYNVSLV 592
K FP IL++ SSKSL++F + L++A+ N+ V
Sbjct: 165 KATKFPHFGILYHPESVGSSKSLKIFKNF-LSLADTPNIQCV 205
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 25.8 bits (54), Expect = 7.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 424 WSLQYNMNFLLAKFSNMLI 368
WS + N +FLL+KF + LI
Sbjct: 180 WSSEMNYHFLLSKFQSRLI 198
>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1206
Score = 25.4 bits (53), Expect = 9.9
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 456 SRKNSSICSGCTTF*KVKVSKIELYMTIKVKRKDLCSSPI*SGTVLP 596
SR+++ +C C V+V ++LY T++ SSP S ++P
Sbjct: 627 SRRSNFMCLACDDA-TVRVLSLDLYTTLENLSVQALSSPANSLCIIP 672
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,303,198
Number of Sequences: 5004
Number of extensions: 68880
Number of successful extensions: 203
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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