Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_P06
         (867 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35461| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   6e-06
SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)                  41   0.001
SB_35703| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.057
SB_43689| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_35284| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  

>SB_35461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 48.8 bits (111), Expect = 6e-06
 Identities = 23/61 (37%), Positives = 36/61 (59%)
 Frame = +2

Query: 674 DSNNDGTGDFKGLITKLDYIQNLGVAAIRLNYIFQADHYPEDYNNVTSMLDIXRSLGVLK 853
           DSN DG GD  G+ ++LDY+  LGV  I L+ IF++      Y +V+  +D+    G ++
Sbjct: 41  DSNGDGNGDLSGIRSRLDYLDYLGVKIIYLSPIFKSPMVDNGY-DVSDFMDVNPMFGTME 99

Query: 854 D 856
           D
Sbjct: 100 D 100


>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
          Length = 1093

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
 Frame = +2

Query: 530 LLWVVLSGLI--ACLAAIIGMIITIPKEC-----NIDLPWYQGKVFYEVFPASFKDSNND 688
           ++ VV  GL+  A + A + +II  PK       ++D  W + +V Y++    F  +   
Sbjct: 610 MVLVVFFGLVILAMIVAAVVIIIVAPKCAKAKVRDMDKSWLENEVVYKISAQQFNKN--- 666

Query: 689 GTGDFKGLITKLDYIQNLGVAAIRLNYIFQADHYPEDYNNVTSMLDIXRSL 841
                 G+I KL Y++NLGV  + +  +F  +   +D NN    ++  ++L
Sbjct: 667 ----LTGIIDKLGYLENLGVKVLSIGAVFSEEDL-QDVNNALGKMEDFQNL 712


>SB_35703| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 873

 Score = 35.5 bits (78), Expect = 0.057
 Identities = 22/63 (34%), Positives = 34/63 (53%)
 Frame = +2

Query: 404 LSKNGDLIIGQAEDVKLNGNLKINNRKLPSFVNWNWVVIRKILLWVVLSGLIACLAAIIG 583
           L +NG LI+ +  DV++ G + I      + V   WVV  +++L  VL  +I+ L  IIG
Sbjct: 133 LKENGALIVDEVNDVRIIGLITIVFILAVALVGLKWVVRTQVILLAVL--IISILDVIIG 190

Query: 584 MII 592
             I
Sbjct: 191 TFI 193


>SB_43689| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 482 KLPSFVNWNWVVIRKILLWVVLSGLIACLAAIIGMIITI 598
           KL   + W WVV+  + +W+VLS  + CL  +  +I +I
Sbjct: 217 KLDDVIKWRWVVV-FVPMWIVLS--LLCLLVLYYVIWSI 252


>SB_35284| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +2

Query: 674 DSNNDGTGDFKGLITKLDYIQNLGVAAIRLNYIFQADHYPEDYNNVTS---MLDIXRSL 841
           D NNDGT DF   I  L  I   G    +L + F+   Y  D +   S   ML+I RS+
Sbjct: 76  DKNNDGTIDFNEFIQGLSIISR-GSKETKLRWAFEI--YDSDGSGEVSKKEMLEIVRSI 131


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,010,889
Number of Sequences: 59808
Number of extensions: 429560
Number of successful extensions: 861
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2479240863
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)