Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_P06
(867 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U60819-1|AAB39829.1| 685|Homo sapiens rBAT protein. 74 6e-13
M95548-1|AAA35500.1| 685|Homo sapiens amino acid transport prot... 74 6e-13
L11696-1|AAA81778.1| 685|Homo sapiens amino acid transport rela... 74 6e-13
D82326-1|BAA11541.1| 685|Homo sapiens Na+-independent neutral a... 74 6e-13
DQ023517-1|AAY89648.1| 551|Homo sapiens SLC3A1 variant G protein. 74 6e-13
DQ023516-1|AAY89647.1| 564|Homo sapiens SLC3A1 variant F protein. 74 6e-13
DQ023515-1|AAY89646.1| 502|Homo sapiens SLC3A1 variant E protein. 74 6e-13
DQ023513-1|AAY89644.1| 391|Homo sapiens SLC3A1 variant C protein. 74 6e-13
BC093626-1|AAH93626.1| 685|Homo sapiens solute carrier family 3... 74 6e-13
BC093624-1|AAH93624.1| 685|Homo sapiens solute carrier family 3... 74 6e-13
BC022386-1|AAH22386.1| 685|Homo sapiens solute carrier family 3... 74 6e-13
AK223146-1|BAD96866.1| 685|Homo sapiens solute carrier family 3... 74 6e-13
AC013717-2|AAX88955.1| 685|Homo sapiens unknown protein. 74 6e-13
AB033549-1|BAB16841.1| 685|Homo sapiens hrBAT protein. 74 6e-13
M21904-1|AAA35489.1| 529|Homo sapiens protein ( Human 4F2 glyco... 36 0.25
J02939-1|AAA52497.1| 529|Homo sapiens MDU1 protein. 36 0.25
J02769-1|AAA51540.1| 529|Homo sapiens H4F2 protein. 36 0.25
BC003000-1|AAH03000.2| 568|Homo sapiens solute carrier family 3... 36 0.25
BC001061-1|AAH01061.2| 630|Homo sapiens solute carrier family 3... 36 0.25
AB018010-1|BAA84649.1| 529|Homo sapiens 4F2 heavy chain protein. 36 0.25
J03569-1|AAA35536.1| 529|Homo sapiens protein ( Human lymphocyt... 35 0.44
>U60819-1|AAB39829.1| 685|Homo sapiens rBAT protein.
Length = 685
Score = 74.1 bits (174), Expect = 6e-13
Identities = 38/112 (33%), Positives = 61/112 (54%)
Frame = +2
Query: 521 RKILLWVVLSGLIACLAAIIGMIITIPKECNIDLPWYQGKVFYEVFPASFKDSNNDGTGD 700
R+IL W+ ++ ++ +AA I +I PK C L W+Q Y+++P SFKDSN DG GD
Sbjct: 86 REILFWLTVASVLVLIAATIAIIALSPK-C---LDWWQEGPMYQIYPRSFKDSNKDGNGD 141
Query: 701 FKGLITKLDYIQNLGVAAIRLNYIFQADHYPEDYNNVTSMLDIXRSLGVLKD 856
KG+ KLDYI L + + + +++ Y V ++ G ++D
Sbjct: 142 LKGIQDKLDYITALNIKTVWITSFYKSSLKDFRY-GVEDFREVDPIFGTMED 192
>M95548-1|AAA35500.1| 685|Homo sapiens amino acid transport protein
protein.
Length = 685
Score = 74.1 bits (174), Expect = 6e-13
Identities = 38/112 (33%), Positives = 61/112 (54%)
Frame = +2
Query: 521 RKILLWVVLSGLIACLAAIIGMIITIPKECNIDLPWYQGKVFYEVFPASFKDSNNDGTGD 700
R+IL W+ ++ ++ +AA I +I PK C L W+Q Y+++P SFKDSN DG GD
Sbjct: 86 REILFWLTVASVLVLIAATIAIIALSPK-C---LDWWQEGPMYQIYPRSFKDSNKDGNGD 141
Query: 701 FKGLITKLDYIQNLGVAAIRLNYIFQADHYPEDYNNVTSMLDIXRSLGVLKD 856
KG+ KLDYI L + + + +++ Y V ++ G ++D
Sbjct: 142 LKGIQDKLDYITALNIKTVWITSFYKSSLKDFRY-GVEDFREVDPIFGTMED 192
>L11696-1|AAA81778.1| 685|Homo sapiens amino acid transport related
protein protein.
Length = 685
Score = 74.1 bits (174), Expect = 6e-13
Identities = 38/112 (33%), Positives = 61/112 (54%)
Frame = +2
Query: 521 RKILLWVVLSGLIACLAAIIGMIITIPKECNIDLPWYQGKVFYEVFPASFKDSNNDGTGD 700
R+IL W+ ++ ++ +AA I +I PK C L W+Q Y+++P SFKDSN DG GD
Sbjct: 86 REILFWLTVASVLVLIAATIAIIALSPK-C---LDWWQEGPMYQIYPRSFKDSNKDGNGD 141
Query: 701 FKGLITKLDYIQNLGVAAIRLNYIFQADHYPEDYNNVTSMLDIXRSLGVLKD 856
KG+ KLDYI L + + + +++ Y V ++ G ++D
Sbjct: 142 LKGIQDKLDYITALNIKTVWITSFYKSSLKDFRY-GVEDFREVDPIFGTMED 192
>D82326-1|BAA11541.1| 685|Homo sapiens Na+-independent neutral and
basic amino acid transporter protein.
Length = 685
Score = 74.1 bits (174), Expect = 6e-13
Identities = 38/112 (33%), Positives = 61/112 (54%)
Frame = +2
Query: 521 RKILLWVVLSGLIACLAAIIGMIITIPKECNIDLPWYQGKVFYEVFPASFKDSNNDGTGD 700
R+IL W+ ++ ++ +AA I +I PK C L W+Q Y+++P SFKDSN DG GD
Sbjct: 86 REILFWLTVASVLVLIAATIAIIALSPK-C---LDWWQEGPMYQIYPRSFKDSNKDGNGD 141
Query: 701 FKGLITKLDYIQNLGVAAIRLNYIFQADHYPEDYNNVTSMLDIXRSLGVLKD 856
KG+ KLDYI L + + + +++ Y V ++ G ++D
Sbjct: 142 LKGIQDKLDYITALNIKTVWITSFYKSSLKDFRY-GVEDFREVDPIFGTMED 192
>DQ023517-1|AAY89648.1| 551|Homo sapiens SLC3A1 variant G protein.
Length = 551
Score = 74.1 bits (174), Expect = 6e-13
Identities = 38/112 (33%), Positives = 61/112 (54%)
Frame = +2
Query: 521 RKILLWVVLSGLIACLAAIIGMIITIPKECNIDLPWYQGKVFYEVFPASFKDSNNDGTGD 700
R+IL W+ ++ ++ +AA I +I PK C L W+Q Y+++P SFKDSN DG GD
Sbjct: 86 REILFWLTVASVLVLIAATIAIIALSPK-C---LDWWQEGPMYQIYPRSFKDSNKDGNGD 141
Query: 701 FKGLITKLDYIQNLGVAAIRLNYIFQADHYPEDYNNVTSMLDIXRSLGVLKD 856
KG+ KLDYI L + + + +++ Y V ++ G ++D
Sbjct: 142 LKGIQDKLDYITALNIKTVWITSFYKSSLKDFRY-GVEDFREVDPIFGTMED 192
>DQ023516-1|AAY89647.1| 564|Homo sapiens SLC3A1 variant F protein.
Length = 564
Score = 74.1 bits (174), Expect = 6e-13
Identities = 38/112 (33%), Positives = 61/112 (54%)
Frame = +2
Query: 521 RKILLWVVLSGLIACLAAIIGMIITIPKECNIDLPWYQGKVFYEVFPASFKDSNNDGTGD 700
R+IL W+ ++ ++ +AA I +I PK C L W+Q Y+++P SFKDSN DG GD
Sbjct: 86 REILFWLTVASVLVLIAATIAIIALSPK-C---LDWWQEGPMYQIYPRSFKDSNKDGNGD 141
Query: 701 FKGLITKLDYIQNLGVAAIRLNYIFQADHYPEDYNNVTSMLDIXRSLGVLKD 856
KG+ KLDYI L + + + +++ Y V ++ G ++D
Sbjct: 142 LKGIQDKLDYITALNIKTVWITSFYKSSLKDFRY-GVEDFREVDPIFGTMED 192
>DQ023515-1|AAY89646.1| 502|Homo sapiens SLC3A1 variant E protein.
Length = 502
Score = 74.1 bits (174), Expect = 6e-13
Identities = 38/112 (33%), Positives = 61/112 (54%)
Frame = +2
Query: 521 RKILLWVVLSGLIACLAAIIGMIITIPKECNIDLPWYQGKVFYEVFPASFKDSNNDGTGD 700
R+IL W+ ++ ++ +AA I +I PK C L W+Q Y+++P SFKDSN DG GD
Sbjct: 86 REILFWLTVASVLVLIAATIAIIALSPK-C---LDWWQEGPMYQIYPRSFKDSNKDGNGD 141
Query: 701 FKGLITKLDYIQNLGVAAIRLNYIFQADHYPEDYNNVTSMLDIXRSLGVLKD 856
KG+ KLDYI L + + + +++ Y V ++ G ++D
Sbjct: 142 LKGIQDKLDYITALNIKTVWITSFYKSSLKDFRY-GVEDFREVDPIFGTMED 192
>DQ023513-1|AAY89644.1| 391|Homo sapiens SLC3A1 variant C protein.
Length = 391
Score = 74.1 bits (174), Expect = 6e-13
Identities = 38/112 (33%), Positives = 61/112 (54%)
Frame = +2
Query: 521 RKILLWVVLSGLIACLAAIIGMIITIPKECNIDLPWYQGKVFYEVFPASFKDSNNDGTGD 700
R+IL W+ ++ ++ +AA I +I PK C L W+Q Y+++P SFKDSN DG GD
Sbjct: 86 REILFWLTVASVLVLIAATIAIIALSPK-C---LDWWQEGPMYQIYPRSFKDSNKDGNGD 141
Query: 701 FKGLITKLDYIQNLGVAAIRLNYIFQADHYPEDYNNVTSMLDIXRSLGVLKD 856
KG+ KLDYI L + + + +++ Y V ++ G ++D
Sbjct: 142 LKGIQDKLDYITALNIKTVWITSFYKSSLKDFRY-GVEDFREVDPIFGTMED 192
>BC093626-1|AAH93626.1| 685|Homo sapiens solute carrier family 3,
member 1 protein.
Length = 685
Score = 74.1 bits (174), Expect = 6e-13
Identities = 38/112 (33%), Positives = 61/112 (54%)
Frame = +2
Query: 521 RKILLWVVLSGLIACLAAIIGMIITIPKECNIDLPWYQGKVFYEVFPASFKDSNNDGTGD 700
R+IL W+ ++ ++ +AA I +I PK C L W+Q Y+++P SFKDSN DG GD
Sbjct: 86 REILFWLTVASVLVLIAATIAIIALSPK-C---LDWWQEGPMYQIYPRSFKDSNKDGNGD 141
Query: 701 FKGLITKLDYIQNLGVAAIRLNYIFQADHYPEDYNNVTSMLDIXRSLGVLKD 856
KG+ KLDYI L + + + +++ Y V ++ G ++D
Sbjct: 142 LKGIQDKLDYITALNIKTVWITSFYKSSLKDFRY-GVEDFREVDPIFGTMED 192
>BC093624-1|AAH93624.1| 685|Homo sapiens solute carrier family 3
(cystine, dibasic and neutral amino acid transporters,
protein.
Length = 685
Score = 74.1 bits (174), Expect = 6e-13
Identities = 38/112 (33%), Positives = 61/112 (54%)
Frame = +2
Query: 521 RKILLWVVLSGLIACLAAIIGMIITIPKECNIDLPWYQGKVFYEVFPASFKDSNNDGTGD 700
R+IL W+ ++ ++ +AA I +I PK C L W+Q Y+++P SFKDSN DG GD
Sbjct: 86 REILFWLTVASVLVLIAATIAIIALSPK-C---LDWWQEGPMYQIYPRSFKDSNKDGNGD 141
Query: 701 FKGLITKLDYIQNLGVAAIRLNYIFQADHYPEDYNNVTSMLDIXRSLGVLKD 856
KG+ KLDYI L + + + +++ Y V ++ G ++D
Sbjct: 142 LKGIQDKLDYITALNIKTVWITSFYKSSLKDFRY-GVEDFREVDPIFGTMED 192
>BC022386-1|AAH22386.1| 685|Homo sapiens solute carrier family 3
(cystine, dibasic and neutral amino acid transporters,
protein.
Length = 685
Score = 74.1 bits (174), Expect = 6e-13
Identities = 38/112 (33%), Positives = 61/112 (54%)
Frame = +2
Query: 521 RKILLWVVLSGLIACLAAIIGMIITIPKECNIDLPWYQGKVFYEVFPASFKDSNNDGTGD 700
R+IL W+ ++ ++ +AA I +I PK C L W+Q Y+++P SFKDSN DG GD
Sbjct: 86 REILFWLTVASVLVLIAATIAIIALSPK-C---LDWWQEGPMYQIYPRSFKDSNKDGNGD 141
Query: 701 FKGLITKLDYIQNLGVAAIRLNYIFQADHYPEDYNNVTSMLDIXRSLGVLKD 856
KG+ KLDYI L + + + +++ Y V ++ G ++D
Sbjct: 142 LKGIQDKLDYITALNIKTVWITSFYKSSLKDFRY-GVEDFREVDPIFGTMED 192
>AK223146-1|BAD96866.1| 685|Homo sapiens solute carrier family 3,
member 1 variant protein.
Length = 685
Score = 74.1 bits (174), Expect = 6e-13
Identities = 38/112 (33%), Positives = 61/112 (54%)
Frame = +2
Query: 521 RKILLWVVLSGLIACLAAIIGMIITIPKECNIDLPWYQGKVFYEVFPASFKDSNNDGTGD 700
R+IL W+ ++ ++ +AA I +I PK C L W+Q Y+++P SFKDSN DG GD
Sbjct: 86 REILFWLTVASVLVLIAATIAIIALSPK-C---LDWWQEGPMYQIYPRSFKDSNKDGNGD 141
Query: 701 FKGLITKLDYIQNLGVAAIRLNYIFQADHYPEDYNNVTSMLDIXRSLGVLKD 856
KG+ KLDYI L + + + +++ Y V ++ G ++D
Sbjct: 142 LKGIQDKLDYITALNIKTVWITSFYKSSLKDFRY-GVEDFREVDPIFGTMED 192
>AC013717-2|AAX88955.1| 685|Homo sapiens unknown protein.
Length = 685
Score = 74.1 bits (174), Expect = 6e-13
Identities = 38/112 (33%), Positives = 61/112 (54%)
Frame = +2
Query: 521 RKILLWVVLSGLIACLAAIIGMIITIPKECNIDLPWYQGKVFYEVFPASFKDSNNDGTGD 700
R+IL W+ ++ ++ +AA I +I PK C L W+Q Y+++P SFKDSN DG GD
Sbjct: 86 REILFWLTVASVLVLIAATIAIIALSPK-C---LDWWQEGPMYQIYPRSFKDSNKDGNGD 141
Query: 701 FKGLITKLDYIQNLGVAAIRLNYIFQADHYPEDYNNVTSMLDIXRSLGVLKD 856
KG+ KLDYI L + + + +++ Y V ++ G ++D
Sbjct: 142 LKGIQDKLDYITALNIKTVWITSFYKSSLKDFRY-GVEDFREVDPIFGTMED 192
>AB033549-1|BAB16841.1| 685|Homo sapiens hrBAT protein.
Length = 685
Score = 74.1 bits (174), Expect = 6e-13
Identities = 38/112 (33%), Positives = 61/112 (54%)
Frame = +2
Query: 521 RKILLWVVLSGLIACLAAIIGMIITIPKECNIDLPWYQGKVFYEVFPASFKDSNNDGTGD 700
R+IL W+ ++ ++ +AA I +I PK C L W+Q Y+++P SFKDSN DG GD
Sbjct: 86 REILFWLTVASVLVLIAATIAIIALSPK-C---LDWWQEGPMYQIYPRSFKDSNKDGNGD 141
Query: 701 FKGLITKLDYIQNLGVAAIRLNYIFQADHYPEDYNNVTSMLDIXRSLGVLKD 856
KG+ KLDYI L + + + +++ Y V ++ G ++D
Sbjct: 142 LKGIQDKLDYITALNIKTVWITSFYKSSLKDFRY-GVEDFREVDPIFGTMED 192
>M21904-1|AAA35489.1| 529|Homo sapiens protein ( Human 4F2
glycosylated heavy chain (4F2HC) antigen gene, exon 9.
).
Length = 529
Score = 35.5 bits (78), Expect = 0.25
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 3/119 (2%)
Frame = +2
Query: 509 WVVIRKILLWVVLSGLIACLAAIIGMIITIPKECNIDLP---WYQGKVFYEVFPASFKDS 679
WV R LL + G + LA + +I+ P+ C +LP W+ Y + +
Sbjct: 77 WVRTRWALLLLFWLGWLGMLAGAVVIIVRAPR-CR-ELPAQKWWHTGALYRI--GDLQAF 132
Query: 680 NNDGTGDFKGLITKLDYIQNLGVAAIRLNYIFQADHYPEDYNNVTSMLDIXRSLGVLKD 856
G G+ GL +LDY+ +L V + L I + +D T +L I + G +D
Sbjct: 133 QGHGAGNLAGLKGRLDYLSSLKVKGLVLGPIHKNQ---KDDVAQTDLLQIDPNFGSKED 188
>J02939-1|AAA52497.1| 529|Homo sapiens MDU1 protein.
Length = 529
Score = 35.5 bits (78), Expect = 0.25
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 3/119 (2%)
Frame = +2
Query: 509 WVVIRKILLWVVLSGLIACLAAIIGMIITIPKECNIDLP---WYQGKVFYEVFPASFKDS 679
WV R LL + G + LA + +I+ P+ C +LP W+ Y + +
Sbjct: 77 WVRTRWALLLLFWLGWLGMLAGAVVIIVRAPR-CR-ELPAQKWWHTGALYRI--GDLQAF 132
Query: 680 NNDGTGDFKGLITKLDYIQNLGVAAIRLNYIFQADHYPEDYNNVTSMLDIXRSLGVLKD 856
G G+ GL +LDY+ +L V + L I + +D T +L I + G +D
Sbjct: 133 QGHGAGNLAGLKGRLDYLSSLKVKGLVLGPIHKNQ---KDDVAQTDLLQIDPNFGSKED 188
>J02769-1|AAA51540.1| 529|Homo sapiens H4F2 protein.
Length = 529
Score = 35.5 bits (78), Expect = 0.25
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 3/119 (2%)
Frame = +2
Query: 509 WVVIRKILLWVVLSGLIACLAAIIGMIITIPKECNIDLP---WYQGKVFYEVFPASFKDS 679
WV R LL + G + LA + +I+ P+ C +LP W+ Y + +
Sbjct: 77 WVRTRWALLLLFWLGWLGMLAGAVVIIVRAPR-CR-ELPAQKWWHTGALYRI--GDLQAF 132
Query: 680 NNDGTGDFKGLITKLDYIQNLGVAAIRLNYIFQADHYPEDYNNVTSMLDIXRSLGVLKD 856
G G+ GL +LDY+ +L V + L I + +D T +L I + G +D
Sbjct: 133 QGHGAGNLAGLKGRLDYLSSLKVKGLVLGPIHKNQ---KDDVAQTDLLQIDPNFGSKED 188
>BC003000-1|AAH03000.2| 568|Homo sapiens solute carrier family 3
(activators of dibasic and neutral amino acid transport
protein.
Length = 568
Score = 35.5 bits (78), Expect = 0.25
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 3/119 (2%)
Frame = +2
Query: 509 WVVIRKILLWVVLSGLIACLAAIIGMIITIPKECNIDLP---WYQGKVFYEVFPASFKDS 679
WV R LL + G + LA + +I+ P+ C +LP W+ Y + +
Sbjct: 116 WVRTRWALLLLFWLGWLGMLAGAVVIIVRAPR-CR-ELPAQKWWHTGALYRI--GDLQAF 171
Query: 680 NNDGTGDFKGLITKLDYIQNLGVAAIRLNYIFQADHYPEDYNNVTSMLDIXRSLGVLKD 856
G G+ GL +LDY+ +L V + L I + +D T +L I + G +D
Sbjct: 172 QGHGAGNLAGLKGRLDYLSSLKVKGLVLGPIHKNQ---KDDVAQTDLLQIDPNFGSKED 227
>BC001061-1|AAH01061.2| 630|Homo sapiens solute carrier family 3
(activators of dibasic and neutral amino acid transport
protein.
Length = 630
Score = 35.5 bits (78), Expect = 0.25
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 3/119 (2%)
Frame = +2
Query: 509 WVVIRKILLWVVLSGLIACLAAIIGMIITIPKECNIDLP---WYQGKVFYEVFPASFKDS 679
WV R LL + G + LA + +I+ P+ C +LP W+ Y + +
Sbjct: 178 WVRTRWALLLLFWLGWLGMLAGAVVIIVRAPR-CR-ELPAQKWWHTGALYRI--GDLQAF 233
Query: 680 NNDGTGDFKGLITKLDYIQNLGVAAIRLNYIFQADHYPEDYNNVTSMLDIXRSLGVLKD 856
G G+ GL +LDY+ +L V + L I + +D T +L I + G +D
Sbjct: 234 QGHGAGNLAGLKGRLDYLSSLKVKGLVLGPIHKNQ---KDDVAQTDLLQIDPNFGSKED 289
>AB018010-1|BAA84649.1| 529|Homo sapiens 4F2 heavy chain protein.
Length = 529
Score = 35.5 bits (78), Expect = 0.25
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 3/119 (2%)
Frame = +2
Query: 509 WVVIRKILLWVVLSGLIACLAAIIGMIITIPKECNIDLP---WYQGKVFYEVFPASFKDS 679
WV R LL + G + LA + +I+ P+ C +LP W+ Y + +
Sbjct: 77 WVRTRWALLLLFWLGWLGMLAGAVVIIVRAPR-CR-ELPAQKWWHTGALYRI--GDLQAF 132
Query: 680 NNDGTGDFKGLITKLDYIQNLGVAAIRLNYIFQADHYPEDYNNVTSMLDIXRSLGVLKD 856
G G+ GL +LDY+ +L V + L I + +D T +L I + G +D
Sbjct: 133 QGHGAGNLAGLKGRLDYLSSLKVKGLVLGPIHKNQ---KDDVAQTDLLQIDPNFGSKED 188
>J03569-1|AAA35536.1| 529|Homo sapiens protein ( Human lymphocyte
activation antigen 4F2 large subunit mRNA, complete cds.
).
Length = 529
Score = 34.7 bits (76), Expect = 0.44
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 3/119 (2%)
Frame = +2
Query: 509 WVVIRKILLWVVLSGLIACLAAIIGMIITIPKECNIDLP---WYQGKVFYEVFPASFKDS 679
WV R LL + G + LA + +I+ P+ C +LP W+ Y + +
Sbjct: 77 WVRTRWALLLLFWLGWLGMLAGAVVIIVRAPR-CR-ELPAQKWWHTGPLYRI--GDLQAF 132
Query: 680 NNDGTGDFKGLITKLDYIQNLGVAAIRLNYIFQADHYPEDYNNVTSMLDIXRSLGVLKD 856
G G+ GL +LDY+ +L V + L I + +D T +L I + G +D
Sbjct: 133 QGHGAGNLAGLKGRLDYLSSLKVKGLVLGPIHKNQ---KDDVAQTDLLQIDPNFGSKED 188
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,780,415
Number of Sequences: 237096
Number of extensions: 2116545
Number of successful extensions: 3305
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 3224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3305
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 11095746082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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