Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_P04
         (867 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    25   0.77 
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    25   0.77 
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     24   1.8  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   3.1  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   4.1  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   9.5  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +3

Query: 555 GVQK--IRAKEIVPGDVVEVSVGDKIPADI 638
           GV++  + A  ++PG  ++V  GDK+  D+
Sbjct: 159 GVERGILTANRMIPGPSIQVCEGDKVVIDV 188


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +3

Query: 555 GVQK--IRAKEIVPGDVVEVSVGDKIPADI 638
           GV++  + A  ++PG  ++V  GDK+  D+
Sbjct: 159 GVERGILTANRMIPGPSIQVCEGDKVVIDV 188


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 543 GDKSGVQKIRAKEIVPGDVVEVSVGDKIPAD-IRLIKIYSTTI 668
           G+K  +  +  K  +PG  VEV +GD++  D +  +   STTI
Sbjct: 93  GNKRSIIVVNRK--MPGPSVEVCLGDEVIIDVVNHLSSDSTTI 133


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +3

Query: 669 RIDQSILTGESVSVIKHTDPIPDPRAVNQD 758
           RID S  TG  V    H +P PD   V  D
Sbjct: 32  RIDFSNTTGAVVECSAHGNPTPDIIWVRSD 61


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 177 EEVLKYFGTDPDKGLSPDQIKRNQEKYGP 263
           EEV + +     KGL  ++IK   +KY P
Sbjct: 18  EEVAQVWEQTLQKGLDTEEIKDLLQKYPP 46


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 638 SPYQNLLHHNP 670
           S +Q +LHHNP
Sbjct: 341 SDHQAMLHHNP 351


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,646
Number of Sequences: 336
Number of extensions: 4024
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 23893023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)