Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_P04
(867 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47271| Best HMM Match : No HMM Matches (HMM E-Value=.) 80 3e-15
SB_14419| Best HMM Match : E1-E2_ATPase (HMM E-Value=0) 73 4e-13
SB_227| Best HMM Match : E1-E2_ATPase (HMM E-Value=0) 70 2e-12
SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 5e-09
SB_52615| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 3e-07
SB_52195| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_21895| Best HMM Match : E1-E2_ATPase (HMM E-Value=0.008) 35 0.099
SB_20525| Best HMM Match : E1-E2_ATPase (HMM E-Value=0) 32 0.70
SB_14128| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.70
SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0) 31 0.92
SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_19875| Best HMM Match : zf-ZPR1 (HMM E-Value=1.7) 30 2.1
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 30 2.1
SB_26963| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_49865| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.5
SB_48337| Best HMM Match : zf-CCHC (HMM E-Value=9.3) 29 6.5
SB_35030| Best HMM Match : Peptidase_A16_N (HMM E-Value=4.3e-05) 29 6.5
SB_34577| Best HMM Match : zf-CCHC (HMM E-Value=9.3) 29 6.5
SB_26543| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.0084) 29 6.5
SB_17795| Best HMM Match : Peptidase_A16_N (HMM E-Value=2e-05) 29 6.5
SB_57248| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.5
SB_52621| Best HMM Match : Peptidase_A16_N (HMM E-Value=2.4e-05) 29 6.5
SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34) 29 6.5
SB_42797| Best HMM Match : Peptidase_A16_N (HMM E-Value=2e-05) 29 6.5
SB_32904| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.5
SB_19976| Best HMM Match : PGI (HMM E-Value=0) 29 6.5
SB_27208| Best HMM Match : ICAT (HMM E-Value=1.8e-09) 28 8.6
>SB_47271| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 811
Score = 79.8 bits (188), Expect = 3e-15
Identities = 61/238 (25%), Positives = 111/238 (46%), Gaps = 9/238 (3%)
Frame = +3
Query: 159 AHTKSVEEVLKYFGTDPDKGLS--PDQIKRNQEKYGPNELPTEEGKSIWQLVLEQFDDLL 332
A T + +++ T +KG+S P+ I+ + +GPN +P + K+ W+ +++ D
Sbjct: 51 ASTGGLHGLVRKLHTSTEKGISGFPEDIENRKRVFGPNVIPPKPPKTFWEFLVDACKDTT 110
Query: 333 VKXXXXXXXXSFVLALFEEHE----DAFSAFVEPFVILLILIANAVVGVWQERNAESAIE 500
+ S +L +F E +A + +++ F IL+ + A+V + E
Sbjct: 111 LIILTVAAVVSLLLGIFAPEECGGSEANTGWIDGFAILIAVCIVALVTAVNDYQKEQQFR 170
Query: 501 ALK---EYEPEMGKVIRGDKSGVQKIRAKEIVPGDVVEVSVGDKIPADIRLIKIYSTTIR 671
L+ E E + + GD ++I EIV GD+ ++ GD +PAD + + S ++
Sbjct: 171 GLQSKIELEHKFTVIRNGD---AKEILNSEIVVGDLCQIKYGDLLPAD--GVVVQSNDLK 225
Query: 672 IDQSILTGESVSVIKHTDPIPDPRAVNQDKKNILFSGTNVAXGKARGIVIGTGLTLPS 845
+D+S LTGES V K +K + +GT++ G + IV GL S
Sbjct: 226 VDESSLTGESDMVKK------------GEKDPLFLAGTHIMEGSGKMIVTAVGLNSQS 271
>SB_14419| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
Length = 543
Score = 72.5 bits (170), Expect = 4e-13
Identities = 42/135 (31%), Positives = 73/135 (54%), Gaps = 1/135 (0%)
Frame = +3
Query: 429 ILLILIANAVVGVWQERNAESAIEALKEYEPEMGKVIRGDKSGVQKIRAKEIVPGDVVEV 608
+ +++ A +QE + +++ K P+ ++R K V+ A+++V GD++ V
Sbjct: 103 LTFVVVVTACFSYYQESKSSKIMDSFKNMVPQEATILRDGKKVVKN--AEQVVIGDIIFV 160
Query: 609 SVGDKIPADIRLIKIYSTTIRIDQSILTGESVSVIKHTDPIPDPRAVNQ-DKKNILFSGT 785
++GD++PADIR+I+ S ++D S LTGES + P+ N + KN+ F T
Sbjct: 161 AIGDRVPADIRVIE--SKGFKVDNSSLTGESEPQARG----PEFTHENPLETKNLAFFST 214
Query: 786 NVAXGKARGIVIGTG 830
N G GIV+ TG
Sbjct: 215 NAVEGTCTGIVVQTG 229
>SB_227| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
Length = 1003
Score = 70.1 bits (164), Expect = 2e-12
Identities = 43/136 (31%), Positives = 70/136 (51%), Gaps = 1/136 (0%)
Frame = +3
Query: 426 VILLILIANAVVGVWQERNAESAIEALKEYEPEMGKVIRGDKSGVQKIRAKEIVPGDVVE 605
V+ ++I + +QE + +E+ K P+ V+R G + + A+ +V GDVV
Sbjct: 134 VLAFVVIVTGIFSYYQESKSSKIMESFKNLVPQEANVLRS--GGRKTVGAENLVIGDVVS 191
Query: 606 VSVGDKIPADIRLIKIYSTTIRIDQSILTGESVSVIKHTDPIPDPRAVNQ-DKKNILFSG 782
V GD++P DIR+++ S ++D S LTGES + PD N + +N+ F
Sbjct: 192 VKGGDRLPGDIRILECKS--FKVDNSSLTGESEPQSRG----PDCTHENPLETRNLAFFS 245
Query: 783 TNVAXGKARGIVIGTG 830
T G A G+V+ TG
Sbjct: 246 TYALEGNATGVVVQTG 261
>SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1311
Score = 58.8 bits (136), Expect = 5e-09
Identities = 28/41 (68%), Positives = 32/41 (78%)
Frame = +3
Query: 369 VLALFEEHEDAFSAFVEPFVILLILIANAVVGVWQERNAES 491
VLALFEE ED +AFVEP VIL+ILI NA++GVWQ N S
Sbjct: 191 VLALFEEGEDQTTAFVEPIVILVILILNAIIGVWQGTNIAS 231
Score = 33.9 bits (74), Expect = 0.17
Identities = 12/22 (54%), Positives = 18/22 (81%)
Frame = +3
Query: 771 LFSGTNVAXGKARGIVIGTGLT 836
++ GTN+A GK G+V+GTGL+
Sbjct: 223 VWQGTNIASGKCSGVVVGTGLS 244
>SB_52615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1154
Score = 53.2 bits (122), Expect = 3e-07
Identities = 40/111 (36%), Positives = 58/111 (52%), Gaps = 3/111 (2%)
Frame = +3
Query: 159 AHTKSVEEVLKYFGTDPDKGLSPDQIKRNQEKYGPNELPTEEGKSIWQLVLEQFDDLLVK 338
A +VEEVLK F TD +GLS D+I+R + +G NE E K++W+ L+Q ++V
Sbjct: 37 ASAMAVEEVLKQFNTDQSRGLSNDEIERRRMLHGWNEFDVVEEKALWKKYLDQAILIVV- 95
Query: 339 XXXXXXXXSFVLAL-FEEHEDAFSAFVEPF--VILLILIANAVVGVWQERN 482
+FV A+ E E +F+ +EP L I N+ GV RN
Sbjct: 96 ------TVAFVQAVDLEIDESSFTGEMEPASKTTLPIPAVNSGSGVSARRN 140
Score = 45.6 bits (103), Expect = 5e-05
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Frame = +3
Query: 651 IYSTTIRIDQSILTGESVSVIKHTDPIPDPRAVN--QDKKNILFSGTNVAXGKARGIVIG 824
+ + + ID+S TGE K T PIP + + ++NI F GT V G+ +G+VIG
Sbjct: 100 VQAVDLEIDESSFTGEMEPASKTTLPIPAVNSGSGVSARRNIAFMGTLVRSGRGKGVVIG 159
Query: 825 TG 830
TG
Sbjct: 160 TG 161
>SB_52195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1173
Score = 39.5 bits (88), Expect = 0.003
Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 10/151 (6%)
Frame = +3
Query: 369 VLALFEEHEDAFSAFVEPFVILLILIANAVVGVWQERNAES----AIEALKEYEPEMGKV 536
V+A+ E+ + F + +LL+ I+ +G W E A+ A+ L +P +
Sbjct: 744 VVAMSEQSSHSPMTFFDTPPMLLVFIS---LGRWMEHVAKGKTSEALAKLLSLQPATAML 800
Query: 537 IRGDKSGVQKIRAKEIVP------GDVVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGE 698
++ K G +I + ++ DV++V G KIP D R+I+ T D+S++TGE
Sbjct: 801 VKL-KPGSHQITEETVISVDLVQRADVLKVVPGAKIPVDGRVIE---GTSMADESLITGE 856
Query: 699 SVSVIKHTDPIPDPRAVNQDKKNILFSGTNV 791
S+ V K +NQ+ IL T+V
Sbjct: 857 SMPVPKKVGDSVIGGTMNQNGA-ILIEATHV 886
>SB_21895| Best HMM Match : E1-E2_ATPase (HMM E-Value=0.008)
Length = 659
Score = 34.7 bits (76), Expect = 0.099
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = +3
Query: 561 QKIRAKEIVPGDVVEVSV-GDKIPADIRLIKIYSTTIRIDQSILTGESVSVIKHTDPIP 734
++I++ ++VPGDV+ + G + D LI S +++S+LTGESV V K P+P
Sbjct: 173 EEIQSTDLVPGDVIVIPAQGATMHCDAALI---SGNCIVNESMLTGESVPVTK--TPLP 226
>SB_20525| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
Length = 1145
Score = 31.9 bits (69), Expect = 0.70
Identities = 25/109 (22%), Positives = 51/109 (46%)
Frame = +3
Query: 399 AFSAFVEPFVILLILIANAVVGVWQERNAESAIEALKEYEPEMGKVIRGDKSGVQKIRAK 578
A S +VE ++ + + + + I L P++ ++ ++G + +
Sbjct: 532 ALSDWVEGATVVYVFALADAIEEYSLHKVQRTISRLMLKRPQVAVLV---ETG-EVVNID 587
Query: 579 EIVPGDVVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGESVSVIKHTD 725
+V G ++ V GD IP D ++K ++ +D+S +TGE + V K D
Sbjct: 588 TVVIGTLIAVRPGDLIPLDGIVVKGRAS---VDESSITGECLPVEKKVD 633
>SB_14128| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1138
Score = 31.9 bits (69), Expect = 0.70
Identities = 19/84 (22%), Positives = 43/84 (51%)
Frame = +3
Query: 396 DAFSAFVEPFVILLILIANAVVGVWQERNAESAIEALKEYEPEMGKVIRGDKSGVQKIRA 575
+AF + ++ +L AV ++++R ++ K+ + +V + +
Sbjct: 81 NAFGKEIAMLPLIFVLAVTAVKDLFEDRRRYNSD---KKVNNTICQVYSSASASYIATKW 137
Query: 576 KEIVPGDVVEVSVGDKIPADIRLI 647
K++V GD++++S + IPADI L+
Sbjct: 138 KDVVVGDIIKLSSNEIIPADILLL 161
>SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1702
Score = 31.5 bits (68), Expect = 0.92
Identities = 21/68 (30%), Positives = 37/68 (54%)
Frame = -3
Query: 511 SFKASMADSAFLSCHTPTTALAIRISKITKGSTKAENASSCSSNKANTNEIIAANSKILT 332
+F S +A + ++P A A+ I+++ STK A + + N+N+I AA S +T
Sbjct: 97 AFMNSSQIAAAVFMNSPKIAAAVSITEVFMNSTKIAAAVNITEVFMNSNKIAAAVS--IT 154
Query: 331 KRSSNCSK 308
+ NC+K
Sbjct: 155 EVFMNCTK 162
>SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1615
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 216 GLSPDQIKRNQEKYGPNELPTE-EGKSIWQLVLEQFDDLLVK 338
G D+ KR+ K P E+PTE K W+LV +D+ V+
Sbjct: 385 GEMADEFKRDYFKMPPEEVPTEIVEKEFWRLVCSMDEDVQVE 426
>SB_19875| Best HMM Match : zf-ZPR1 (HMM E-Value=1.7)
Length = 323
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +3
Query: 111 ISETN*RQHSNSTMEDAHTKSVEEVLKYFGTDPDKGLSPDQIKRNQEKYGPN 266
+S T + H N MED + +EEV PD+ +P + +N+ K GPN
Sbjct: 253 LSITRGKSHKNWVMEDMLAELLEEVELRERCQPDERPAPQE--QNRGKQGPN 302
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = -2
Query: 776 EENVLLVLVHGAGVRNGVGVFDDGDRFTSQDRLIDTDCGGVDFDKANVS 630
E+NVL+ + G + DDG F + DT GG DFD V+
Sbjct: 192 EKNVLIFDLGGGTFDVSILTIDDGSLFEVKSTAGDTHLGGEDFDNRLVN 240
>SB_26963| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 516
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -2
Query: 713 DDGDRFTSQDRLIDTDCGGVDFD 645
DDGD S D +D+DCGG D D
Sbjct: 47 DDGDGGDSGDDDVDSDCGGDDDD 69
>SB_49865| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 627
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 111 ISETN*RQHSNSTMEDAHTKSVEEVLKYFGTDPDKGLSPDQIKRNQEKYGPN 266
+S T + H N ME+ + +EEV PD+ +P + +N+ K GPN
Sbjct: 57 LSITRGKSHENWVMEEMLAELLEEVELRERCQPDERPAPQE--QNRGKQGPN 106
>SB_48337| Best HMM Match : zf-CCHC (HMM E-Value=9.3)
Length = 146
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 111 ISETN*RQHSNSTMEDAHTKSVEEVLKYFGTDPDKGLSPDQIKRNQEKYGPN 266
+S T + H N ME+ + +EEV PD+ +P + +N+ K GPN
Sbjct: 57 LSITRGKSHENWVMEEMLAELLEEVELRERCQPDERPAPQE--QNRGKQGPN 106
>SB_35030| Best HMM Match : Peptidase_A16_N (HMM E-Value=4.3e-05)
Length = 353
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 111 ISETN*RQHSNSTMEDAHTKSVEEVLKYFGTDPDKGLSPDQIKRNQEKYGPN 266
+S T + H N ME+ + +EEV PD+ +P + +N+ K GPN
Sbjct: 264 LSITRGKSHENWVMEEMLAELLEEVELRERCQPDERPAPQE--QNRGKQGPN 313
>SB_34577| Best HMM Match : zf-CCHC (HMM E-Value=9.3)
Length = 146
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 111 ISETN*RQHSNSTMEDAHTKSVEEVLKYFGTDPDKGLSPDQIKRNQEKYGPN 266
+S T + H N ME+ + +EEV PD+ +P + +N+ K GPN
Sbjct: 57 LSITRGKSHENWVMEEMLAELLEEVELRERCQPDERPAPQE--QNRGKQGPN 106
>SB_26543| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.0084)
Length = 202
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 111 ISETN*RQHSNSTMEDAHTKSVEEVLKYFGTDPDKGLSPDQIKRNQEKYGPN 266
+S T + H N ME+ + +EEV PD+ +P + +N+ K GPN
Sbjct: 113 LSITRGKSHENWVMEEMLAELLEEVELRERCQPDERPAPQE--QNRGKQGPN 162
>SB_17795| Best HMM Match : Peptidase_A16_N (HMM E-Value=2e-05)
Length = 272
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 111 ISETN*RQHSNSTMEDAHTKSVEEVLKYFGTDPDKGLSPDQIKRNQEKYGPN 266
+S T + H N ME+ + +EEV PD+ +P + +N+ K GPN
Sbjct: 183 LSITRGKSHENWVMEEMLAELLEEVELRERCQPDERPAPQE--QNRGKQGPN 232
>SB_57248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 281
Score = 28.7 bits (61), Expect = 6.5
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Frame = +3
Query: 372 LALFEEHEDAFSAFVEPFV-ILLILIANAVVGVWQERNAESAIEALKEYEPEMGKVIRGD 548
L +FE+ E++ +V PF + L+L+A + W + A E EP M K +
Sbjct: 78 LIVFEKTEESAVDYVTPFFAVCLLLLATCLAYAWDKDVA--------EIEPAMPKE-QVA 128
Query: 549 KSGVQKIRAKEIVPGDVVEVSVGDKIPADIRLIKIYSTTIRIDQSILTGES 701
+ A E+V E + KIP + + K TTI + +TGE+
Sbjct: 129 MATCHLEEAVELVASITEEKTRAHKIPKN-KKTKAKKTTIPVPCRGITGEA 178
>SB_52621| Best HMM Match : Peptidase_A16_N (HMM E-Value=2.4e-05)
Length = 332
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 111 ISETN*RQHSNSTMEDAHTKSVEEVLKYFGTDPDKGLSPDQIKRNQEKYGPN 266
+S T + H N ME+ + +EEV PD+ +P + +N+ K GPN
Sbjct: 243 LSITRGKSHENWVMEEMLAELLEEVELRERCQPDERPAPQE--QNRGKQGPN 292
>SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34)
Length = 262
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 554 WSTKNPCQGNCPRGRC*SVRW 616
+ST NP Q C GRC S +W
Sbjct: 224 YSTCNPSQFKCDNGRCISSKW 244
>SB_42797| Best HMM Match : Peptidase_A16_N (HMM E-Value=2e-05)
Length = 668
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 111 ISETN*RQHSNSTMEDAHTKSVEEVLKYFGTDPDKGLSPDQIKRNQEKYGPN 266
+S T + H N ME+ + +EEV PD+ +P + +N+ K GPN
Sbjct: 264 LSITRGKSHENWVMEEMLAELLEEVELRERCQPDERPAPQE--QNRGKQGPN 313
>SB_32904| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 477
Score = 28.7 bits (61), Expect = 6.5
Identities = 19/74 (25%), Positives = 37/74 (50%)
Frame = -3
Query: 523 SGSYSFKASMADSAFLSCHTPTTALAIRISKITKGSTKAENASSCSSNKANTNEIIAANS 344
S S S ++ S+ S + +++ + S S ++SS SS+ +N+N ++NS
Sbjct: 126 SSSSSSNSNSNSSSSSSSSSSSSSGSSSSSNSNSNSNSNSSSSSNSSSNSNSNSSSSSNS 185
Query: 343 KILTKRSSNCSKTN 302
+ SSN S ++
Sbjct: 186 SSNSNSSSNSSSSS 199
>SB_19976| Best HMM Match : PGI (HMM E-Value=0)
Length = 664
Score = 28.7 bits (61), Expect = 6.5
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Frame = +3
Query: 453 AVVGVWQERNAESAIEALKEYEPEMGKVIRGDKSGVQKIRAKEIVPGDV-----VEVSVG 617
A++ +W ++ EAL Y + K+ + G+ + K I D +EVS
Sbjct: 290 AMLSIWYNNFFKAETEALIPYTQYLQKLAPYLQQGIMESNGKSIGRDDTLSHKKIEVSKF 349
Query: 618 DKIPADIRLIKIYSTTIRIDQSILTGESVSVIKHTDPI 731
K+ A I L K ++ R++ + L E S+ K +D I
Sbjct: 350 SKLDAKIALKKAFN---RVENTYLQPE-FSINKESDSI 383
>SB_27208| Best HMM Match : ICAT (HMM E-Value=1.8e-09)
Length = 569
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +3
Query: 474 ERNAESAIEALKEYEPEMGKVIRGDKSGVQKIRAKEIVPGDVVEVSVGD--KIPADIRL 644
E + +E LKE++ + K+I GD + V + ++ ++ ++ D K P IR+
Sbjct: 43 EETKKETVEQLKEFKESLDKIIAGDMTLVDHLNGMQL----AIQAAISDAFKTPEVIRM 97
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,452,670
Number of Sequences: 59808
Number of extensions: 501804
Number of successful extensions: 1524
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1513
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2479240863
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -