Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_P01
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    28   1.3  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    27   2.9  
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    27   3.9  
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy...    26   5.1  
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces...    26   6.8  
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    25   9.0  

>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +2

Query: 227 VNPGRFMAYTSSENGLRFQKVTSLIEVFRKLSDCSTTIELDPTTK 361
           +NP   ++ T  ++ LR+ K    + + ++  D + T EL+PTT+
Sbjct: 538 INPIGGISKTDLKSFLRYAKEALDLPILQEFLDATPTAELEPTTE 582


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
 Frame = +2

Query: 578 GNFSLTYEDYNYKLPMIKACIAAASSQVFMVGTTWSPPAWM-KTSGSLTGVGYLKEEYXE 754
           GNF   + D  Y    I A  A+A     + G  W    W+  T+  L  +G   + Y  
Sbjct: 262 GNFGTVFVDNGYWQKAIAANPASALPGYILGGLAWFAIPWLAATTMGLVALGLENKPYFP 321

Query: 755 AY 760
            Y
Sbjct: 322 TY 323


>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 608 NYKLPMIKACIAAASSQVFMVGTTWSPPAWMKTSGSLT 721
           N K+P++ A +      + MVG   SPP  +  S +LT
Sbjct: 61  NAKVPVLLALLLGFQHALAMVGGVTSPPRIIAASANLT 98


>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 185 VCNATYCDTITKETVNPGRFMAYT 256
           VCN   CD IT     PG++ +Y+
Sbjct: 394 VCNEISCDGITANGTYPGQYGSYS 417


>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 16/42 (38%), Positives = 18/42 (42%)
 Frame = +3

Query: 180 YVSAMQRIAIQSRKKL*IPVDLWRILRQRMDYVSRK*PRSSK 305
           Y   M  I I  +K   I  DLW  +RQ  DYV     R  K
Sbjct: 388 YGELMDSIYIYDKKCQPIAYDLWLEVRQICDYVCANWKRPDK 429


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 422 NIQDEGLKQALIDSY 466
           NI D GLKQ ++DSY
Sbjct: 163 NIDDLGLKQRILDSY 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,196,041
Number of Sequences: 5004
Number of extensions: 69085
Number of successful extensions: 168
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)