Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_O20
         (814 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9BPR4 Cluster: Cuticle protein; n=1; Bombyx mori|Rep: ...    39   0.13 
UniRef50_Q01HJ7 Cluster: H0117D06-OSIGBa0088B06.1 protein; n=3; ...    37   0.53 
UniRef50_Q9Q6Q5 Cluster: RNA-directed RNA polymerase; n=124; Bir...    37   0.70 
UniRef50_Q189T3 Cluster: Glycerol kinase; n=3; Clostridium diffi...    36   0.92 
UniRef50_Q9U504 Cluster: Putative cuticle protein; n=1; Manduca ...    34   3.7  
UniRef50_A4TCW6 Cluster: Putative sugar transferase; n=1; Mycoba...    34   4.9  
UniRef50_Q9VV30 Cluster: CG13060-PA; n=3; Diptera|Rep: CG13060-P...    33   6.5  
UniRef50_Q16EK6 Cluster: Cuticle protein, putative; n=2; Culicid...    33   6.5  
UniRef50_O77057 Cluster: Cuticle protein; n=1; Bombyx mori|Rep: ...    33   6.5  
UniRef50_UPI00015A6056 Cluster: UPI00015A6056 related cluster; n...    33   8.6  
UniRef50_Q9SUX1 Cluster: Putative glycine-rich protein; n=1; Ara...    33   8.6  

>UniRef50_Q9BPR4 Cluster: Cuticle protein; n=1; Bombyx mori|Rep:
           Cuticle protein - Bombyx mori (Silk moth)
          Length = 291

 Score = 39.1 bits (87), Expect = 0.13
 Identities = 16/23 (69%), Positives = 17/23 (73%)
 Frame = +1

Query: 736 TPYAHHAGLFHSAPLVHSXPLVH 804
           TP  H A L HSAP+VHS PLVH
Sbjct: 231 TPVVHSAPLIHSAPVVHSAPLVH 253



 Score = 37.1 bits (82), Expect = 0.53
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +1

Query: 739 PYAHHAGLFHSAPLVHSXPLVH 804
           P  H A L+H+ PLVHS PLVH
Sbjct: 256 PVVHTASLYHATPLVHSAPLVH 277



 Score = 34.7 bits (76), Expect = 2.8
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +1

Query: 739 PYAHHAGLFHSAPLVHSXPLVH 804
           P  H A + HSAPLVHS P+VH
Sbjct: 238 PLIHSAPVVHSAPLVHSGPVVH 259



 Score = 33.5 bits (73), Expect = 6.5
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +1

Query: 739 PYAHHAGLFHSAPLVHSXPLVH 804
           P AH A + HSAP++HS P++H
Sbjct: 202 PAAHSAPVVHSAPVIHSGPVLH 223



 Score = 33.5 bits (73), Expect = 6.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 739 PYAHHAGLFHSAPLVHSXPLVH 804
           P  H   + HSAPL+HS P+VH
Sbjct: 226 PVVHSTPVVHSAPLIHSAPVVH 247



 Score = 33.1 bits (72), Expect = 8.6
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 739 PYAHHAGLFHSAPLVHSXPLVH 804
           P  H A + HS P+VHS PL+H
Sbjct: 220 PVLHSAPVVHSTPVVHSAPLIH 241


>UniRef50_Q01HJ7 Cluster: H0117D06-OSIGBa0088B06.1 protein; n=3;
           Oryza sativa|Rep: H0117D06-OSIGBa0088B06.1 protein -
           Oryza sativa (Rice)
          Length = 773

 Score = 37.1 bits (82), Expect = 0.53
 Identities = 21/67 (31%), Positives = 28/67 (41%)
 Frame = -2

Query: 708 RSMCXYGGXSADIHAGLMRHGCWGYCSDHGGSIGVSYDGSSDCVGDDCWARDHIHAGLVR 529
           R++   GG + D   G +  GC   C    G++ V+ D    C G  C  R  I  GL  
Sbjct: 147 RTLAYIGGDNVDADVGSLTTGCVATCRLQAGNLTVTDDDVGACSGIGC-CRTSIPVGLQY 205

Query: 528 NRSWSDD 508
              W DD
Sbjct: 206 YYVWFDD 212


>UniRef50_Q9Q6Q5 Cluster: RNA-directed RNA polymerase; n=124;
           Birnaviridae|Rep: RNA-directed RNA polymerase - Avian
           infectious bursal disease virus (IBDV) (Gumboro disease
           virus)
          Length = 881

 Score = 36.7 bits (81), Expect = 0.70
 Identities = 36/152 (23%), Positives = 57/152 (37%), Gaps = 2/152 (1%)
 Frame = -2

Query: 576 GDDCWARDHIHAGL--VRNRSWSDDGSTVSQVTQGTFFQPVSMTVTSKYWCSVGGVCEDW 403
           G+    R H+ A +  +  R WSD+G  +   T  TF   ++  +     C +  +    
Sbjct: 420 GEANCTRQHMQAAMYYILTRGWSDNGDPMFNQTWATFAMNIAPALVVDSSCLIMNLQIKT 479

Query: 402 CGNSVAIDGGAGTYINTRLMXXXXXXXXXXXXXSYNRRDSSVHERSVVSFQYFSLKVESA 223
            G      G A T+IN  L+                 R  S   +S+      + K+E  
Sbjct: 480 YGQG---SGNAATFINNHLLSTLVLDQWNLMR---QPRPDSEEFKSIEDKLGINFKIE-R 532

Query: 222 SVDDFRGVQRPAVGVQDDSGMMXGAAPPAKRS 127
           S+DD RG  R  V +    G + G   P + S
Sbjct: 533 SIDDIRGKLRQLV-LLAQPGYLSGGVEPEQSS 563


>UniRef50_Q189T3 Cluster: Glycerol kinase; n=3; Clostridium
           difficile|Rep: Glycerol kinase - Clostridium difficile
           (strain 630)
          Length = 508

 Score = 36.3 bits (80), Expect = 0.92
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -2

Query: 621 GGSIGVSYDGSSDCVGDDC-WARDHIHAGLVRNRSWSDDGSTVSQVTQGTFFQPVSMTVT 445
           G  +  +YDG     G    W RD I  G+++N S +DD +     T G +F P    + 
Sbjct: 297 GDKVTYAYDGGVYIAGAAIQWLRDGI--GVIKNYSETDDMANSISSTGGVYFVPAFAGIA 354

Query: 444 SKYW 433
           + YW
Sbjct: 355 APYW 358


>UniRef50_Q9U504 Cluster: Putative cuticle protein; n=1; Manduca
           sexta|Rep: Putative cuticle protein - Manduca sexta
           (Tobacco hawkmoth) (Tobacco hornworm)
          Length = 209

 Score = 34.3 bits (75), Expect = 3.7
 Identities = 18/31 (58%), Positives = 19/31 (61%)
 Frame = +1

Query: 163 PAVVLDPHGRPLDTAEVINARALHLQAKVLE 255
           PA VL   GRPLDT +V   RA H  AK LE
Sbjct: 49  PANVLGADGRPLDTLDVNLDRAAHYTAKALE 79


>UniRef50_A4TCW6 Cluster: Putative sugar transferase; n=1;
           Mycobacterium gilvum PYR-GCK|Rep: Putative sugar
           transferase - Mycobacterium gilvum PYR-GCK
          Length = 283

 Score = 33.9 bits (74), Expect = 4.9
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -2

Query: 516 SDDGSTVSQVTQGTFFQPVSMTVTSKYWCSVGGVCEDWCG 397
           S  G TV   T    F  +S  VT+  W +VGG CE++ G
Sbjct: 149 SPPGDTVVCTTDYALFWSLSFAVTADTWRTVGGFCEEYQG 188


>UniRef50_Q9VV30 Cluster: CG13060-PA; n=3; Diptera|Rep: CG13060-PA -
           Drosophila melanogaster (Fruit fly)
          Length = 131

 Score = 33.5 bits (73), Expect = 6.5
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +1

Query: 736 TPYAHHAGLFHSAPLVHSXPLVH 804
           T Y+H A   H+AP+VHS P+VH
Sbjct: 70  TTYSHPAVAVHAAPVVHSVPVVH 92


>UniRef50_Q16EK6 Cluster: Cuticle protein, putative; n=2;
           Culicidae|Rep: Cuticle protein, putative - Aedes aegypti
           (Yellowfever mosquito)
          Length = 322

 Score = 33.5 bits (73), Expect = 6.5
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +1

Query: 127 APFCRWRSPRHHPAVVLDPHGRPLDTAEVINARALHLQA 243
           AP  +W+ P H P +    +G P++T EV +ARA H  A
Sbjct: 192 APIHKWQGPIHIPVI---HNGVPVETPEVQHARAFHASA 227


>UniRef50_O77057 Cluster: Cuticle protein; n=1; Bombyx mori|Rep:
           Cuticle protein - Bombyx mori (Silk moth)
          Length = 197

 Score = 33.5 bits (73), Expect = 6.5
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 739 PYAHHAGLFHSAPLVHSXPLVH 804
           P  H A L H+AP+VH+ P+VH
Sbjct: 55  PIVHAAPLIHAAPVVHAAPIVH 76


>UniRef50_UPI00015A6056 Cluster: UPI00015A6056 related cluster; n=1;
           Danio rerio|Rep: UPI00015A6056 UniRef100 entry - Danio
           rerio
          Length = 289

 Score = 33.1 bits (72), Expect = 8.6
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -2

Query: 654 RHGCWGYCSDHGGSIGVSYDGSSDCVGDDCWARDHIHA-GLVRNRSWSDDGSTVS 493
           R+GCW Y    GGS  VS   S  C+     + + +HA G V  +S SD    VS
Sbjct: 155 RYGCWSYLGMTGGSQTVSLQ-SPGCMWSGVASHELMHALGFVHEQSRSDRDRYVS 208


>UniRef50_Q9SUX1 Cluster: Putative glycine-rich protein; n=1;
           Arabidopsis thaliana|Rep: Putative glycine-rich protein
           - Arabidopsis thaliana (Mouse-ear cress)
          Length = 608

 Score = 33.1 bits (72), Expect = 8.6
 Identities = 29/99 (29%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
 Frame = -2

Query: 690 GGXSADIHAGLMRHGCWG-YCSDHGGSIGVSYDGSSDCVGDDCWARDHIHAGLVRNRSWS 514
           GG    +  G+    C G +    GG  G  + GS   VG DC        G+    S  
Sbjct: 134 GGVFGGVSGGVFGGVCGGVFGGSVGGICGGVFGGS---VGGDC-------GGVFGRASGG 183

Query: 513 DDGSTVSQVTQGTFFQPVSMTVTSKYWCSVGGVCEDWCG 397
             G  V +V+ G F           +  SVGG+C DW G
Sbjct: 184 VFGGIVGRVSGGEFGGVCGGVSGGVFGGSVGGICGDWFG 222


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 651,703,410
Number of Sequences: 1657284
Number of extensions: 11607472
Number of successful extensions: 41431
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 38867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41334
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 70377768045
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)