Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_O20
         (814 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    26   5.5  
SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subuni...    26   5.5  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   9.7  

>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 110 ESEQHHHRFHNERGL 66
           E EQHH  FHN+ G+
Sbjct: 685 ELEQHHANFHNKAGI 699


>SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subunit
           Nat3 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 180

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 19/60 (31%), Positives = 31/60 (51%)
 Frame = +2

Query: 344 INLVLMYVPAPPSIATLLPHQSSHTPPTLHQYLLVTVMDTG*KNVPWVTWLTVLPSSLQL 523
           I+  L Y+   PS+  +   +S  + PTL  Y++     TG +    VT +TV P+S +L
Sbjct: 29  ISFYLSYLNKWPSLCVV--QESDLSDPTLMGYIMGKSEGTGKEWHTHVTAITVAPNSRRL 86


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +1

Query: 70  PRSL*NRWWCCSLSPLWLAAPFCRWRSPRHHPAVVL 177
           P SL  +W C  +S LW      +W   R +  V L
Sbjct: 633 PDSLLRQWACLCISQLWENYSEAKWSGTRDNAHVKL 668


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,495,345
Number of Sequences: 5004
Number of extensions: 41481
Number of successful extensions: 99
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)