Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_O20
         (814 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0130 - 11622139-11623325,11626144-11627116                       37   0.017
06_03_0472 + 21145523-21145892,21146098-21146141,21146916-211469...    32   0.62 
06_01_0220 - 1673657-1675765                                           30   2.5  
08_02_0580 - 18953208-18953513,18953668-18953868,18953929-189540...    29   5.8  
04_03_1025 + 21803807-21805249                                         29   5.8  
02_05_0343 + 28132348-28132878,28133256-28133366,28133477-281335...    29   5.8  
03_03_0193 - 15312568-15312753,15312811-15312933,15313112-153131...    28   7.7  

>04_03_0130 - 11622139-11623325,11626144-11627116
          Length = 719

 Score = 37.1 bits (82), Expect = 0.017
 Identities = 21/67 (31%), Positives = 28/67 (41%)
 Frame = -2

Query: 708 RSMCXYGGXSADIHAGLMRHGCWGYCSDHGGSIGVSYDGSSDCVGDDCWARDHIHAGLVR 529
           R++   GG + D   G +  GC   C    G++ V+ D    C G  C  R  I  GL  
Sbjct: 147 RTLAYIGGDNVDADVGSLTTGCVATCRLQAGNLTVTDDDVGACSGIGC-CRTSIPVGLQY 205

Query: 528 NRSWSDD 508
              W DD
Sbjct: 206 YYVWFDD 212


>06_03_0472 +
           21145523-21145892,21146098-21146141,21146916-21146974,
           21147090-21147162,21147281-21147342,21147424-21147499,
           21147618-21147692,21148699-21148782,21148947-21149015,
           21149614-21149673,21150211-21150288,21150468-21150556,
           21150868-21150964,21151084-21151137,21151643-21151738,
           21151930-21152118,21152200-21152277,21152511-21152555,
           21152728-21152820,21152907-21152987
          Length = 623

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
 Frame = -2

Query: 687 GXSADIHAGLMRHGCWG--YCSDHGGSIGVSY-DGSSDCVGDDCWARDHIHAGLVRNRSW 517
           G SA +  G  + G +     S    ++G  +  GSSDCVGDD WA   +   + RN   
Sbjct: 277 GISATLCGGKTKEGVFVGVLLSMSSTAVGAQFVGGSSDCVGDDHWAEPVLKFLMERNSIN 336

Query: 516 SDDGSTVSQVTQGT 475
           +  G    QVT GT
Sbjct: 337 ALHG----QVTVGT 346


>06_01_0220 - 1673657-1675765
          Length = 702

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 687 GXSADIHAGLMRHGCWGYCSDHGGSIGVSYDGSSDCVGD 571
           G +A I+  L R G      D GG +G+ YDGS     D
Sbjct: 317 GEAAQIYCELARLGAAMRVIDVGGGLGIDYDGSHSAQTD 355


>08_02_0580 -
           18953208-18953513,18953668-18953868,18953929-18954009,
           18954096-18954410,18954493-18954636,18954733-18954822,
           18954907-18954983,18955122-18955182,18955264-18955490,
           18955581-18955740,18955825-18956025,18956114-18956209,
           18956380-18956565,18956641-18956810,18957044-18957275,
           18958652-18959029
          Length = 974

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/60 (25%), Positives = 24/60 (40%)
 Frame = -2

Query: 612 IGVSYDGSSDCVGDDCWARDHIHAGLVRNRSWSDDGSTVSQVTQGTFFQPVSMTVTSKYW 433
           I +   G   C+G     +     G + N ++S +G T S    G    PV+  + S  W
Sbjct: 716 IAIMAKGKLRCIGTSIRLKSKFGTGYIANVNFSGNGHTQSPNINGNTEVPVNPNIESVKW 775


>04_03_1025 + 21803807-21805249
          Length = 480

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 445 GHGHGHWLKKRSLGHLAYSAPII 513
           GHGHGH L++R L  +A +A ++
Sbjct: 8   GHGHGHELRRRRLLPVASAAAVL 30


>02_05_0343 +
           28132348-28132878,28133256-28133366,28133477-28133590,
           28134077-28134367,28134447-28134557,28134658-28134711,
           28135587-28135666,28135749-28135864,28136491-28136605,
           28136740-28136788,28136984-28137106
          Length = 564

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 459 SMTVTSKYWCSVGGVCEDWCGNSVAIDGGA 370
           S T++ + W  +GG+ E   G SV I G A
Sbjct: 78  SKTISGRVWTEIGGLDEAAAGRSVLIRGAA 107


>03_03_0193 -
           15312568-15312753,15312811-15312933,15313112-15313134,
           15313196-15313349,15314443-15314754
          Length = 265

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 444 WSRSWTLAEKTFPGSLGLQCSHHRSSCGF 530
           W+     A K +   LG + SHH S+CGF
Sbjct: 122 WTTPEAKATKDWRKQLGEKLSHHLSTCGF 150


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,901,286
Number of Sequences: 37544
Number of extensions: 368549
Number of successful extensions: 1439
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1436
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)