Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_F_O20
(814 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.4
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.4
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.9
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.9
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 22 5.9
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 22 5.9
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.8
AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein ... 22 7.8
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 22 7.8
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.4
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 11/84 (13%)
Frame = -2
Query: 639 GYCSDHGGSIGVSYDGS----------SDCVGDDCWAR-DHIHAGLVRNRSWSDDGSTVS 493
G+ + S+ V++DGS S C D W D H + + SW+ DG+ V
Sbjct: 82 GFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKMDVAWFPFDDQHCDM-KFGSWTYDGNQVD 140
Query: 492 QVTQGTFFQPVSMTVTSKYWCSVG 421
V +S +T+ W +G
Sbjct: 141 LVLSSETGGDLSDFITNGEWYLIG 164
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.4
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 11/84 (13%)
Frame = -2
Query: 639 GYCSDHGGSIGVSYDGS----------SDCVGDDCWAR-DHIHAGLVRNRSWSDDGSTVS 493
G+ + S+ V++DGS S C D W D H + + SW+ DG+ V
Sbjct: 82 GFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKMDIAWFPFDDQHCDM-KFGSWTYDGNQVD 140
Query: 492 QVTQGTFFQPVSMTVTSKYWCSVG 421
V +S +T+ W +G
Sbjct: 141 LVLSSETGGDLSDFITNGEWYLIG 164
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.2 bits (45), Expect = 5.9
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 11/84 (13%)
Frame = -2
Query: 639 GYCSDHGGSIGVSYDGS----------SDCVGDDCWAR-DHIHAGLVRNRSWSDDGSTVS 493
G+ + S+ V++DGS S C D W D H + + SW+ DG+ V
Sbjct: 82 GFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKIDIAWFPFDDQHCDM-KFGSWTYDGNQVD 140
Query: 492 QVTQGTFFQPVSMTVTSKYWCSVG 421
V +S +T+ W +G
Sbjct: 141 LVLSSETGGDLSDFITNGEWYLIG 164
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.2 bits (45), Expect = 5.9
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 11/84 (13%)
Frame = -2
Query: 639 GYCSDHGGSIGVSYDGS----------SDCVGDDCWAR-DHIHAGLVRNRSWSDDGSTVS 493
G+ + S+ V++DGS S C D W D H + + SW+ DG+ V
Sbjct: 82 GFDGTYQTSVVVTHDGSCLYVPPGIFGSTCKIDIAWFPFDDQHCDM-KFGSWTYDGNQVD 140
Query: 492 QVTQGTFFQPVSMTVTSKYWCSVG 421
V +S +T+ W +G
Sbjct: 141 LVLSSETGGDLSDFITNGEWYLIG 164
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 22.2 bits (45), Expect = 5.9
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = +1
Query: 178 DPHGRPLDTAEVINARALHLQAKVLE 255
DP+ RP+ + ++ N + L K++E
Sbjct: 56 DPNVRPISSHQIANNVTMQLLPKLME 81
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 22.2 bits (45), Expect = 5.9
Identities = 6/16 (37%), Positives = 9/16 (56%)
Frame = -3
Query: 137 QKGAASHRGESEQHHH 90
+ + H G+S HHH
Sbjct: 391 ENNSRGHSGQSSSHHH 406
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.8
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 11/84 (13%)
Frame = -2
Query: 639 GYCSDHGGSIGVSYDGS----------SDCVGDDCWAR-DHIHAGLVRNRSWSDDGSTVS 493
G+ + S+ V++DGS S C D W D H + + SW+ DG+ V
Sbjct: 82 GFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKIDITWFPFDDQHCDM-KFGSWTYDGNQVD 140
Query: 492 QVTQGTFFQPVSMTVTSKYWCSVG 421
V +S +T+ W +G
Sbjct: 141 LVLSSETGGDLSDFITNGEWYLIG 164
>AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein
protein.
Length = 352
Score = 21.8 bits (44), Expect = 7.8
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = +1
Query: 148 SPRHHPAVVLDPHGRPLDTAEVINARALHLQA 243
S HH PH +P A+ HLQA
Sbjct: 166 SQMHHQMHTQHPHMQPQQGQHQSQAQQQHLQA 197
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 21.8 bits (44), Expect = 7.8
Identities = 9/28 (32%), Positives = 12/28 (42%)
Frame = -3
Query: 110 ESEQHHHRFHNERGLCFLTMYVDHFKPH 27
E+ Q HH N T DH +P+
Sbjct: 136 ETLQRHHHLQNHHHHLQSTAVQDHHRPY 163
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,768
Number of Sequences: 438
Number of extensions: 3065
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -