Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_O19
         (394 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    27   0.79 
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    27   1.0  
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    26   2.4  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    25   4.2  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    24   7.3  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    24   9.7  
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    24   9.7  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    24   9.7  

>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 27.5 bits (58), Expect = 0.79
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = -1

Query: 271 SIAFKIAFWLSISERSKCMGPSRCRQNSQEVSRRNMQSTQQVKYMQRQLGRCRQ 110
           +I  KI   L+I ERS  +     R  S+ +SRR  +  Q++   QR+L    Q
Sbjct: 194 AIREKIGRELNIPERSVTIWFQNRRAKSKLISRRQEEERQRILREQRELDSLNQ 247


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -1

Query: 199 RQNSQEVSRRNMQSTQQVKYMQRQLGR 119
           +Q +Q+  + N  S QQ++Y+  +LG+
Sbjct: 541 KQRNQKFLKNNATSIQQIQYLDEELGK 567


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 171 RLLTSWLFCLHLLGPIHLLRSLIDNQKAILNAIEFRLCD-TLTNYIQL 311
           +L + WLF L     ++LL SLI N+K       ++L D T  N++ L
Sbjct: 5   KLESKWLFSLTESQKLYLLISLIINKKLPEAKFVYKLLDYTKGNWLSL 52


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -1

Query: 274 NSIAFKIAFWLSISERSKCMGPSRCRQNSQEVSRRNMQST 155
           N I   I   L   ERS+ + PS C + SQ      ++ST
Sbjct: 54  NRIHSAIQMTLCDFERSQILAPSECVRGSQSECVSKLEST 93


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +3

Query: 78   CRKAFGVXVPSCLHRPSCRCIYFTCCVLCIFR 173
            CR      + + L  PS    Y +CC L +F+
Sbjct: 1977 CRYFLLTAIANQLRYPSSHTYYASCCFLYLFK 2008


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 205 RCRQNSQEVSRRNMQSTQQVKYMQRQLG 122
           +C QN+  +S  N        Y+Q QLG
Sbjct: 97  KCYQNALAISPNNESLWYDAAYLQAQLG 124


>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2

Query: 188 AILPTPTRPHTLTS 229
           ++L TPTRPH L++
Sbjct: 281 SVLNTPTRPHALST 294


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 213 PIHLLRSLIDNQKAILNAIEFRLCDTLTNY 302
           P+H+L+++ D  KAIL        ++LTN+
Sbjct: 277 PMHVLQAVQDRAKAILFYNASTASNSLTNF 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 912,146
Number of Sequences: 5004
Number of extensions: 13765
Number of successful extensions: 39
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)