Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_O19
         (394 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   1.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   1.3  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   2.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   2.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   2.2  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   3.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   3.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   3.8  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 138 IYFTCCVLCIFRLLTSWL 191
           IY  CC+L I   ++ WL
Sbjct: 248 IYIPCCMLVIVSWVSFWL 265


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 138 IYFTCCVLCIFRLLTSWL 191
           IY  CC+L I   ++ WL
Sbjct: 248 IYIPCCMLVIVSWVSFWL 265


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 16/58 (27%), Positives = 22/58 (37%)
 Frame = +3

Query: 126 SCRCIYFTCCVLCIFRLLTSWLFCLHLLGPIHLLRSLIDNQKAILNAIEFRLCDTLTN 299
           SC+CIY     LC+   L  +L     L    L+ S   N   +    EF +     N
Sbjct: 182 SCKCIYVQSINLCMAGRLFGYLCPGMALSQFDLMGSPYRNLTFVRREGEFSVLQVSFN 239


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +3

Query: 156 VLCIFRLLTSWLFCLHLLGPIHLLRSLIDNQKAILNAIE 272
           ++C+  L+  W  CL  L P  +L+    N    +N ++
Sbjct: 282 LICMMLLIGHWSGCLQFLVP--MLQGFPSNSWVAINELQ 318


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +3

Query: 156 VLCIFRLLTSWLFCLHLLGPIHLLRSLIDNQKAILNAIE 272
           ++C+  L+  W  CL  L P  +L+    N    +N ++
Sbjct: 250 LICMMLLIGHWSGCLQFLVP--MLQGFPSNSWVAINELQ 286


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -1

Query: 145 KYMQRQLGRCRQLGTHTPK 89
           +Y Q    RC+ +G H P+
Sbjct: 342 RYRQELQKRCKWMGIHEPE 360


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +3

Query: 24  HFNQHVQISAVRCYSCVCCRKAFGVXVPSCLHR 122
           H+  H   +  + Y C  C K+F V     +HR
Sbjct: 110 HYRTH---TGEKPYQCEYCSKSFSVKENLSVHR 139



 Score = 21.0 bits (42), Expect = 5.1
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 57 RCYSCVCCRKAF 92
          + Y C+ C+KAF
Sbjct: 60 KTYQCLLCQKAF 71


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -1

Query: 145 KYMQRQLGRCRQLGTHTPK 89
           +Y Q    RC+ +G H P+
Sbjct: 342 RYRQELQKRCKWMGIHEPE 360


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,843
Number of Sequences: 438
Number of extensions: 1081
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9638226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)