Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_F_O17
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub...    29   0.76 
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    27   3.1  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    27   3.1  
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    25   7.1  
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo...    25   9.3  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    25   9.3  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   9.3  

>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
           subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 490

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = +2

Query: 311 NANTKSCRLYLRIDYQLSSRFQSEKKPVKYHEL 409
           NA+T+S + +L  D+QLS   +SE+K  KYH L
Sbjct: 32  NASTQSQQKFL--DFQLSWCPESERKTTKYHLL 62


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = +2

Query: 299 FVNVNANTKSCRLYLRIDYQLSSRFQS----EKKPVKYHELFARLLFRKRKY*STNKKKI 466
           F+++    ++ RLY+     L +RF+S    E   +++H L     F+K K   T K K 
Sbjct: 161 FIDMTIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTFKKNKP-QTMKNKF 219

Query: 467 FFFCYF 484
           +    F
Sbjct: 220 YMVIPF 225


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 544 YLLRKTGLKKSQKYIYHAILKVTKKKYFFFICTLV 440
           ++ R+TGL K   Y Y +        YF  IC L+
Sbjct: 493 FMSRRTGLTKHPYYRYISGFGAALNIYFMIICNLI 527


>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 347 IDYQLSSRFQSEKKPVKYHELFARLLFRKRK 439
           ++Y  S+  Q +K   ++H LF + L+ KR+
Sbjct: 774 VEYNKSANKQLKKDSKEHHALFRKHLYTKRR 804


>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
           Agn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 547 SWCLSKLKILYNSI*VLNV 603
           SW +SKL ++YN+   LN+
Sbjct: 53  SWMMSKLTLMYNAADALNL 71


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 347 IDYQLSSRFQSEKKPVKYHELFARLLFRKRKY 442
           I+YQ SS   +E   VK H L + +   K KY
Sbjct: 694 IEYQKSSCVITESDTVKLHSLESEISLLKDKY 725


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 518  KIAKVYIPCYLKSNKKKIFF 459
            K  K+Y PC+L + K+ + F
Sbjct: 1157 KFEKIYFPCFLLAKKRYVGF 1176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,544,653
Number of Sequences: 5004
Number of extensions: 51485
Number of successful extensions: 110
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)